* using log directory ‘/srv/hornik/tmp/CRAN/deeptime.Rcheck’
* using R Under development (unstable) (2024-08-16 r87026)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘deeptime/DESCRIPTION’ ... OK
* this is package ‘deeptime’ version ‘2.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/11s] NOTE
Maintainer: ‘William Gearty <willgearty@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://ngmdb.usgs.gov/fgdc_gds/geolsymstd.php
    From: man/geo_pattern.Rd
          man/grid.pattern_geo.Rd
          man/scale_fill_geopattern.Rd
          inst/doc/geo.html
    Status: 404
    Message: Not Found
  URL: https://ngmdb.usgs.gov/fgdc_gds/geolsymstd/fgdc-geolsym-patternchart.pdf
    From: man/geo_pattern.Rd
          man/scale_fill_geopattern.Rd
          inst/doc/geo.html
    Status: 404
    Message: Not Found
  URL: https://ngmdb.usgs.gov/fgdc_gds/index.php
    From: man/geo_pattern.Rd
          man/grid.pattern_geo.Rd
          inst/doc/geo.html
    Status: 404
    Message: Not Found
  URL: https://www.fgdc.gov/
    From: man/geo_pattern.Rd
          man/grid.pattern_geo.Rd
          inst/doc/geo.html
    Status: 404
    Message: Not Found

Size of tarball: 6472448 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘deeptime’ can be installed ... [9s/9s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [17s/17s] OK
  Running ‘testthat.R’ [17s/17s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [43s/44s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE