* using log directory ‘/srv/hornik/tmp/CRAN/debiasedQR.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘debiasedQR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘debiasedQR’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Alexander Giessing ’ New submission Possibly misspelled words in DESCRIPTION: Debiased (3:8, 10:170) Giessing (10:136) debiasing (10:40) Author field should be Authors@R. Current value is: c(person("Alexander", "Giessing", role = c("aut", "cre"), email = "giessing@umich.edu", comment = c(ORCID = "0000-0002-6917-0652")), The Title field should be in title case. Current version is: ‘Debiased inference on L1-penalized high-dimensional linear quantile regression models’ In title case that is: ‘Debiased Inference on L1-Penalized High-Dimensional Linear Quantile Regression Models’ Found the following URLs which should use \doi (with the DOI name only): File ‘DebiasProg.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘DebiasProgCV.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘DebiasedPredict.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘DensityMatrix.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘DualObj.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘DualProg-ADMM.Rd’: https://doi.org/10.1093/jrsssb/qkad075 https://doi.org/10.1561/2200000016 File ‘DualProg-CD.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘LambdaBC.Rd’: https://doi.org/10.1214/10-AOS827 File ‘OptGamma.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘PrimalProg.Rd’: https://doi.org/10.1093/jrsssb/qkad075 File ‘SISRQ.Rd’: https://doi.org/10.1111/j.1467-9868.2008.00674.x * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘debiasedQR’ can be installed ... [9s/9s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/3s] OK * checking whether the package can be loaded with stated dependencies ... [3s/3s] OK * checking whether the package can be unloaded cleanly ... [3s/3s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [3s/3s] OK * checking loading without being on the library search path ... [3s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] NOTE Found if() conditions comparing class() to string: File ‘debiasedQR/R/DebiasedPredict.R’: if ((class(object) != "drq") && (class(object) != "drqcv")) ... File ‘debiasedQR/R/DebiasedPredict.R’: if (class(object) == "drq") ... Use inherits() (or maybe is()) instead. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'DebiasProg.Rd': \usage lines wider than 90 characters: drq(Y, X, x, tau, density = "nid", sparsity = NULL, lambda = NULL, gamma = NULL, max_iter = 5000, algo="CD") These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from Rd file 'DensityMatrix.Rd': densityMatrix Code: function(Y, X, beta, tau, density = "nid", sparsity, screening = TRUE) Docs: function(Y, X, beta, tau = tau, density = "nid", sparsity, screening = TRUE) Mismatches in argument default values: Name: 'tau' Code: Docs: tau * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [7m/11m] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed DebiasedPredict 403.992 2.175 655.822 * checking PDF version of manual ... [4s/4s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character , (U+FF0C) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character , (U+FF0C) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘debiasedQR-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 5 NOTEs