* using log directory 'd:/RCompile/CRANincoming/R-devel/debar.Rcheck'
* using R Under development (unstable) (2024-01-11 r85801 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'debar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'debar' version '0.1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Cameron M. Nugent <camnugent@gmail.com>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Barcode (3:46)
  COI (3:39, 8:79, 14:27)
  Denoiser (3:26)
  Durbin (11:73)
  PHMM (11:12, 13:72)
  Viterbi (11:28)
  al (11:83)
  barcode (8:40, 14:31)
  cytochrome (8:55)
  denoising (7:71)
  et (11:80)
  indel (15:53)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-08-19 as email to the maintainer is
    undeliverable.

The Title field should be in title case. Current version is:
'A Post-Clustering Denoiser for COI-5P Barcode Data'
In title case that is:
'A Post-Clustering Denoiser for COI-5p Barcode Data'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'debar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) aa_check.Rd:26: Lost braces
    26 | a class object of code{"ccs_reads"}
       |                       ^
checkRd: (-1) adjust.Rd:23: Lost braces
    23 | a class object of code{"ccs_reads"}
       |                       ^
checkRd: (-1) denoise.Rd:87: Lost braces
    87 | a class object of code{"DNAseq"}
       |                       ^
checkRd: (-1) frame.Rd:37: Lost braces
    37 | a class object of code{"DNAseq"}
       |                       ^
checkRd: (-1) outseq.Rd:29: Lost braces
    29 | a class object of code{"ccs_reads"}
       |                       ^
checkRd: (-1) write_fasta.Rd:24: Lost braces
    24 | a class object of code{"DNAseq"}
       |                       ^
checkRd: (-1) write_fastq.Rd:28: Lost braces
    28 | a class object of code{"DNAseq"}
       |                       ^
checkRd: (-1) write_wrapper.Rd:31: Lost braces
    31 | a class object of code{"DNAseq"}
       |                       ^
* checking Rd metadata ... OK
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* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [20s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [48s] OK
  Running 'testthat.R' [48s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs