downloading reverse dependencies ... downloading divent_0.5-2.tar.gz ... ok installing dependencies ‘dbmss’, ‘EntropyEstimation’, ‘SPECIES’ begin installing package ‘dbmss’ begin installing package ‘SPECIES’ begin installing package ‘EntropyEstimation’ * installing *source* package ‘EntropyEstimation’ ... ** this is package ‘EntropyEstimation’ version ‘1.2.1’ ** package ‘EntropyEstimation’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpySBpHV/R.INSTALL4281c7f959136/EntropyEstimation/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c EntropEst.c -o EntropEst.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o EntropyEstimation.so EntropEst.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpySBpHV/R.INSTALL4281c7f959136/EntropyEstimation/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-EntropyEstimation/00new/EntropyEstimation/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EntropyEstimation) * installing *source* package ‘SPECIES’ ... ** this is package ‘SPECIES’ version ‘1.2.0’ ** package ‘SPECIES’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ7JXmI/R.INSTALL42820278667ff/SPECIES/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c PPCG.f90 -o PPCG.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c WLunpmle.f90 -o WLunpmle.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c norrispollock.f90 -o norrispollock.o norrispollock.f90:108:80: 108 | like=like+lgam(SUM(n1(2:(t+1)))+n00+1)-lgam(n00+1)-lgam(SUM(n1(2:(t+1)))+1) | ^ Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized] norrispollock.f90:67:42: 67 | DOUBLE PRECISION like,tempprob,lgam,n00, untrunPmix | ^ note: ‘n00’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c pnpmle.f90 -o pnpmle.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c shared.f90 -o shared.o shared.f90:209:62: 209 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN | ^ Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized] shared.f90:148:36: 148 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2 | ^ note: ‘sum_b’ was declared here gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ7JXmI/R.INSTALL42820278667ff/SPECIES/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SPECIES/00new/SPECIES/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SPECIES) * installing *source* package ‘dbmss’ ... ** this is package ‘dbmss’ version ‘2.11-0’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4hbIeJ/R.INSTALL4281e4c905fa4/dbmss/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CountNbd.cpp -o CountNbd.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb.h:32, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel/TBB.h:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel.h:24, from CountNbd.cpp:137: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here 251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(long unsigned int)’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here 291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL ) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::hash_map_base::bucket*’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o dbmss.so CountNbd.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4hbIeJ/R.INSTALL4281e4c905fa4/dbmss/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dbmss/00new/dbmss/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dbmss) checking dbmss_2.11-0.tar.gz ... checking divent_0.5-2.tar.gz ... Depends: Package: dbmss Depends: R (>= 3.5.0), Rcpp (>= 0.12.14), spatstat.explore Imports: cubature, doFuture, foreach, future, ggplot2, methods, progressr, RcppParallel, reshape2, rlang, spatstat.geom, spatstat.utils, spatstat.random, stats, tibble LinkingTo: Rcpp, RcppParallel Timings: user system elapsed dbmss 104.151 7.625 114.39 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: dbmss ... OK rdepends_divent ... OK