test_that("demean works", { df <- iris set.seed(123) df$ID <- sample.int(4, nrow(df), replace = TRUE) # fake-ID set.seed(123) df$binary <- as.factor(rbinom(150, 1, 0.35)) # binary variable set.seed(123) x <- demean(df, select = c("Sepal.Length", "Petal.Length"), by = "ID") expect_snapshot(head(x)) set.seed(123) expect_message( { x <- demean(df, select = c("Sepal.Length", "binary", "Species"), by = "ID") }, "have been coerced to numeric" ) expect_snapshot(head(x)) set.seed(123) expect_message( { y <- demean(df, select = ~ Sepal.Length + binary + Species, by = ~ID) }, "have been coerced to numeric" ) expect_message( { z <- demean(df, select = c("Sepal.Length", "binary", "Species"), by = "ID") }, "have been coerced to numeric" ) expect_identical(y, z) }) test_that("demean interaction term", { dat <- data.frame( a = c(1, 2, 3, 4, 1, 2, 3, 4), x = c(4, 3, 3, 4, 1, 2, 1, 2), y = c(1, 2, 1, 2, 4, 3, 2, 1), ID = c(1, 2, 3, 1, 2, 3, 1, 2) ) set.seed(123) expect_snapshot(demean(dat, select = c("a", "x*y"), by = "ID")) }) test_that("demean shows message if some vars don't exist", { dat <- data.frame( a = c(1, 2, 3, 4, 1, 2, 3, 4), x = c(4, 3, 3, 4, 1, 2, 1, 2), y = c(1, 2, 1, 2, 4, 3, 2, 1), ID = c(1, 2, 3, 1, 2, 3, 1, 2) ) set.seed(123) expect_error( demean(dat, select = "foo", by = "ID"), regexp = "not found" ) }) # see issue #520 test_that("demean for cross-classified designs (by > 1)", { skip_if_not_installed("poorman") data(efc, package = "datawizard") dat <- na.omit(efc) dat$e42dep <- factor(dat$e42dep) dat$c172code <- factor(dat$c172code) x2a <- dat %>% data_group(e42dep) %>% data_modify( c12hour_e42dep = mean(c12hour) ) %>% data_ungroup() %>% data_group(c172code) %>% data_modify( c12hour_c172code = mean(c12hour) ) %>% data_ungroup() %>% data_modify( c12hour_within = c12hour - c12hour_e42dep - c12hour_c172code ) out <- degroup( dat, select = "c12hour", by = c("e42dep", "c172code"), suffix_demean = "_within" ) expect_equal( out$c12hour_e42dep_between, x2a$c12hour_e42dep, tolerance = 1e-4, ignore_attr = TRUE ) expect_equal( out$c12hour_within, x2a$c12hour_within, tolerance = 1e-4, ignore_attr = TRUE ) x2a <- dat %>% data_group(e42dep) %>% data_modify( c12hour_e42dep = mean(c12hour, na.rm = TRUE), neg_c_7_e42dep = mean(neg_c_7, na.rm = TRUE) ) %>% data_ungroup() %>% data_group(c172code) %>% data_modify( c12hour_c172code = mean(c12hour, na.rm = TRUE), neg_c_7_c172code = mean(neg_c_7, na.rm = TRUE) ) %>% data_ungroup() %>% data_modify( c12hour_within = c12hour - c12hour_e42dep - c12hour_c172code, neg_c_7_within = neg_c_7 - neg_c_7_e42dep - neg_c_7_c172code ) out <- degroup( dat, select = c("c12hour", "neg_c_7"), by = c("e42dep", "c172code"), suffix_demean = "_within" ) expect_equal( out$c12hour_e42dep_between, x2a$c12hour_e42dep, tolerance = 1e-4, ignore_attr = TRUE ) expect_equal( out$neg_c_7_c172code_between, x2a$neg_c_7_c172code, tolerance = 1e-4, ignore_attr = TRUE ) expect_equal( out$neg_c_7_within, x2a$neg_c_7_within, tolerance = 1e-4, ignore_attr = TRUE ) expect_equal( out$c12hour_within, x2a$c12hour_within, tolerance = 1e-4, ignore_attr = TRUE ) }) test_that("demean, sanity checks", { data(efc, package = "datawizard") dat <- na.omit(efc) dat$e42dep <- factor(dat$e42dep) dat$c172code <- factor(dat$c172code) expect_error( degroup( dat, select = c("c12hour", "neg_c_8"), by = c("e42dep", "c172code"), suffix_demean = "_within" ), regex = "Variable \"neg_c_8\" was not found" ) expect_error( degroup( dat, select = c("c12hour", "neg_c_8"), by = c("e42dep", "c173code"), suffix_demean = "_within" ), regex = "Variables \"neg_c_8\" and \"c173code\" were not found" ) })