* using log directory 'd:/RCompile/CRANincoming/R-devel/datacutr.Rcheck'
* using R Under development (unstable) (2024-11-14 r87333 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'datacutr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'datacutr' version '0.2.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  datacut_ 2024-08-13_092740.html
  datacut_ 2024-08-13_093004.html
  datacut_ 2024-08-13_093946.html
  datacut_ 2024-09-09_083021.html
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'datacutr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'datacut_ 2024-08-13_092740.html' 'datacut_
  2024-08-13_093004.html' 'datacut_ 2024-08-13_093946.html'
  'datacut_ 2024-09-09_083021.html'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] ERROR
  Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(datacutr)
  > 
  > test_check("datacutr")
  [1] "At least 1 patient with missing datacut date."
  [1] "At least 1 patient with missing datacut date, all records will be kept."
  "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS read_out.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc102d8661655b1.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2024_11_15_20_55_02_2083\RtmpwNCKMl\rmarkdown-str102d844ce2344.html" 
  "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS read_out.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc102d850455f48.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2024_11_15_20_55_02_2083\RtmpwNCKMl\rmarkdown-str102d88da2d3e.html" 
  "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS read_out.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc102d85ff45b60.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2024_11_15_20_55_02_2083\RtmpwNCKMl\rmarkdown-str102d82bfc2179.html" 
  "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS read_out.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc102d81672778f.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2024_11_15_20_55_02_2083\RtmpwNCKMl\rmarkdown-str102d85a192743.html" 
  [1] "At least 1 patient with missing datacut date, all records will be kept."
  [ FAIL 4 | WARN 8 | SKIP 0 | PASS 55 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-process_cut.R:177:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ──
  Error in `convert(output_file, run_citeproc)`: failed to copy rendered pandoc artefact to 'C:/Users/CRAN/Documents/dummyfile/datacut_ 2024-11-15_19:55:55.html'
  Backtrace:
      ▆
   1. └─datacutr::process_cut(...) at test-process_cut.R:177:3
   2.   └─datacutr::read_out(...)
   3.     └─rmarkdown::render(...)
   4.       └─rmarkdown (local) convert(output_file, run_citeproc)
  ── Error ('test-process_cut.R:221:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ──
  Error in `convert(output_file, run_citeproc)`: failed to copy rendered pandoc artefact to 'C:/Users/CRAN/Documents/dummyfile/datacut_ 2024-11-15_19:55:57.html'
  Backtrace:
      ▆
   1. └─datacutr::process_cut(...) at test-process_cut.R:221:3
   2.   └─datacutr::read_out(...)
   3.     └─rmarkdown::render(...)
   4.       └─rmarkdown (local) convert(output_file, run_citeproc)
  ── Error ('test-read_out.R:79:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ──
  Error in `convert(output_file, run_citeproc)`: failed to copy rendered pandoc artefact to 'D:/RCompile/CRANincoming/R-devel/datacutr.Rcheck/tests/testthat/datacut_ 2024-11-15_19:55:59.html'
  Backtrace:
      ▆
   1. └─datacutr::read_out(...) at test-read_out.R:79:3
   2.   └─rmarkdown::render(...)
   3.     └─rmarkdown (local) convert(output_file, run_citeproc)
  ── Error ('test-read_out.R:95:3'): Correct .Rmd file is ran successfully when fields are empty ──
  Error in `convert(output_file, run_citeproc)`: failed to copy rendered pandoc artefact to 'D:/RCompile/CRANincoming/R-devel/datacutr.Rcheck/tests/testthat/datacut_ 2024-11-15_19:56:01.html'
  Backtrace:
      ▆
   1. └─datacutr::read_out() at test-read_out.R:95:3
   2.   └─rmarkdown::render(...)
   3.     └─rmarkdown (local) convert(output_file, run_citeproc)
  
  [ FAIL 4 | WARN 8 | SKIP 0 | PASS 55 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE