# ---------- clean_colnames ---------- test_that("clean_colnames rejects non-data.frame", { expect_error(clean_colnames(NULL), "must not be NULL") expect_error(clean_colnames("text"), "must be a data.frame") expect_error(clean_colnames(1:5), "must be a data.frame") }) # ---------- iGAP_to_MM ---------- test_that("iGAP_to_MM rejects non-data.frame", { expect_error(iGAP_to_MM(NULL, 1), "must not be NULL") expect_error(iGAP_to_MM("text", 1), "must be a data.frame") }) test_that("iGAP_to_MM rejects bad location", { data(abalone.iGAP) expect_error(iGAP_to_MM(abalone.iGAP, NULL), "must not be NULL") expect_error(iGAP_to_MM(abalone.iGAP, "a"), "must be numeric") expect_error(iGAP_to_MM(abalone.iGAP, 0), "must be between 1 and") expect_error(iGAP_to_MM(abalone.iGAP, 999), "must be between 1 and") }) # ---------- MM_to_iGAP ---------- test_that("MM_to_iGAP rejects non-data.frame", { expect_error(MM_to_iGAP(NULL), "must not be NULL") expect_error(MM_to_iGAP(42), "must be a data.frame") }) test_that("MM_to_iGAP warns when no _min/_max columns", { df <- data.frame(a = 1:3, b = 4:6) expect_warning(MM_to_iGAP(df), "no _min/_max columns") }) # ---------- RSDA_to_MM ---------- test_that("RSDA_to_MM rejects NULL", { expect_error(RSDA_to_MM(NULL), "must not be NULL") }) test_that("RSDA_to_MM rejects wrong type", { expect_error(RSDA_to_MM("text"), "must be a data.frame or symbolic_tbl") expect_error(RSDA_to_MM(1:5), "must be a data.frame or symbolic_tbl") }) test_that("RSDA_to_MM rejects bad RSDA", { data(mushroom.int) expect_error(RSDA_to_MM(mushroom.int, RSDA = "yes"), "must be TRUE or FALSE") expect_error(RSDA_to_MM(mushroom.int, RSDA = NA), "must be TRUE or FALSE") }) # ---------- RSDA_to_iGAP ---------- test_that("RSDA_to_iGAP rejects NULL", { expect_error(RSDA_to_iGAP(NULL), "must not be NULL") }) test_that("RSDA_to_iGAP rejects non-symbolic_tbl", { expect_error(RSDA_to_iGAP(data.frame(a = 1)), "must be a symbolic_tbl") }) # ---------- RSDA_format ---------- test_that("RSDA_format rejects non-data.frame", { expect_error(RSDA_format(NULL), "must not be NULL") expect_error(RSDA_format("text"), "must be a data.frame") }) test_that("RSDA_format rejects wrong param types", { df <- data.frame(a = 1:3, b = 4:6) expect_error(RSDA_format(df, sym_type1 = 123), "must be a character") expect_error(RSDA_format(df, location = "a"), "must be numeric") expect_error(RSDA_format(df, sym_type2 = 123), "must be a character") expect_error(RSDA_format(df, sym_type2 = "I", var = 123), "must be a character") }) # ---------- set_variable_format ---------- test_that("set_variable_format rejects non-data.frame", { expect_error(set_variable_format(NULL, location = 1), "must not be NULL") expect_error(set_variable_format(42, location = 1), "must be a data.frame") }) test_that("set_variable_format rejects bad location", { df <- data.frame(a = 1:3, b = letters[1:3]) expect_error(set_variable_format(df, location = 0), "must be between 1 and") expect_error(set_variable_format(df, location = 99), "must be between 1 and") }) test_that("set_variable_format rejects missing var", { df <- data.frame(a = 1:3, b = letters[1:3]) expect_error(set_variable_format(df, var = "nonexistent"), "not found in data") }) # ---------- write_csv_table ---------- test_that("write_csv_table rejects non-data.frame", { expect_error(write_csv_table(NULL, "f.csv"), "must not be NULL") expect_error(write_csv_table(42, "f.csv"), "must be a data.frame") }) test_that("write_csv_table rejects bad file", { df <- data.frame(a = 1) expect_error(write_csv_table(df, NULL), "must be a non-empty character") expect_error(write_csv_table(df, ""), "must be a non-empty character") expect_error(write_csv_table(df, 123), "must be a non-empty character") }) test_that("write_csv_table rejects bad output", { df <- data.frame(a = 1) expect_error(write_csv_table(df, "f.csv", output = "yes"), "must be TRUE or FALSE") }) test_that("write_csv_table rejects nonexistent directory", { df <- data.frame(a = 1) expect_error(write_csv_table(df, "nonexistent_dir_abc123/f.csv", output = TRUE), "directory does not exist") }) # ---------- int_mean / int_var ---------- test_that("int_mean rejects non-symbolic_tbl", { expect_error(int_mean(NULL, "x"), "must not be NULL") expect_error(int_mean(data.frame(a = 1), "a"), "must be a symbolic_tbl") }) test_that("int_mean rejects missing var_name", { data(mushroom.int) expect_error(int_mean(mushroom.int, "NoSuchVar"), "not found in data") }) test_that("int_mean warns on invalid method", { data(mushroom.int) expect_warning(int_mean(mushroom.int, "Pileus.Cap.Width", method = "INVALID"), "unknown method") }) test_that("int_var rejects non-symbolic_tbl", { expect_error(int_var(NULL, "x"), "must not be NULL") }) test_that("int_var rejects missing var_name", { data(mushroom.int) expect_error(int_var(mushroom.int, "NoSuchVar"), "not found in data") }) # ---------- int_cov / int_cor ---------- test_that("int_cov rejects non-symbolic_tbl", { expect_error(int_cov(NULL, "x", "y"), "must not be NULL") }) test_that("int_cov rejects missing var_name", { data(mushroom.int) expect_error(int_cov(mushroom.int, "NoSuchVar", "Pileus.Cap.Width"), "not found in data") expect_error(int_cov(mushroom.int, "Pileus.Cap.Width", "NoSuchVar"), "not found in data") }) test_that("int_cor rejects non-symbolic_tbl", { expect_error(int_cor(NULL, "x", "y"), "must not be NULL") }) # ---------- hist_mean / hist_var ---------- test_that("hist_mean rejects non-MatH", { expect_error(hist_mean(NULL, "x"), "must not be NULL") expect_error(hist_mean(data.frame(a = 1), "a"), "must be a MatH object") }) test_that("hist_mean rejects missing var_name", { blood <- HistDAWass::BLOOD expect_error(hist_mean(blood, "NoSuchVar"), "not found in data") }) test_that("hist_mean warns on invalid method", { blood <- HistDAWass::BLOOD var1 <- colnames(blood@M)[1] expect_warning( tryCatch(hist_mean(blood, var1, method = "INVALID"), error = function(e) NULL), "unknown method" ) }) test_that("hist_var rejects non-MatH", { expect_error(hist_var(NULL, "x"), "must not be NULL") }) # ---------- hist_cov / hist_cor ---------- test_that("hist_cov rejects non-MatH", { expect_error(hist_cov(NULL, "x", "y"), "must not be NULL") }) test_that("hist_cov rejects missing var_name", { blood <- HistDAWass::BLOOD var1 <- colnames(blood@M)[1] expect_error(hist_cov(blood, "NoSuchVar", var1), "not found in data") expect_error(hist_cov(blood, var1, "NoSuchVar"), "not found in data") }) test_that("hist_cor rejects non-MatH", { expect_error(hist_cor(NULL, "x", "y"), "must not be NULL") }) # ---------- MM_to_RSDA ---------- test_that("MM_to_RSDA rejects non-data.frame", { expect_error(MM_to_RSDA(NULL), "must not be NULL") expect_error(MM_to_RSDA("text"), "must be a data.frame") expect_error(MM_to_RSDA(1:5), "must be a data.frame") }) test_that("MM_to_RSDA warns when no _min/_max columns", { df <- data.frame(a = 1:3, b = 4:6) expect_warning(MM_to_RSDA(df), "no _min/_max columns") }) # ---------- iGAP_to_RSDA ---------- test_that("iGAP_to_RSDA rejects non-data.frame", { expect_error(iGAP_to_RSDA(NULL, 1), "must not be NULL") expect_error(iGAP_to_RSDA("text", 1), "must be a data.frame") }) test_that("iGAP_to_RSDA rejects bad location", { data(abalone.iGAP) expect_error(iGAP_to_RSDA(abalone.iGAP, NULL), "must not be NULL") expect_error(iGAP_to_RSDA(abalone.iGAP, "a"), "must be numeric") expect_error(iGAP_to_RSDA(abalone.iGAP, 0), "must be between 1 and") expect_error(iGAP_to_RSDA(abalone.iGAP, 999), "must be between 1 and") }) # ---------- SODAS_to_MM / SODAS_to_iGAP ---------- test_that("SODAS_to_MM rejects bad path", { expect_error(SODAS_to_MM(NULL), "must be a non-empty character") expect_error(SODAS_to_MM(""), "must be a non-empty character") expect_error(SODAS_to_MM("no_such_file.xml"), "file not found") }) test_that("SODAS_to_iGAP rejects bad path", { expect_error(SODAS_to_iGAP(NULL), "must be a non-empty character") expect_error(SODAS_to_iGAP(""), "must be a non-empty character") expect_error(SODAS_to_iGAP("no_such_file.xml"), "file not found") })