Package check result: NOTE Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Tyson Barrett ’ Found the following (possibly) invalid URLs: URL: https://stackoverflow.com/questions/10600060/how-to-do-cross-join-in-r From: inst/doc/datatable-joins.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/11782084/reading-in-large-text-files-in-r From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/15170741/how-does-one-do-a-full-join-using-data-table From: inst/doc/datatable-joins.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/1727772/quickly-reading-very-large-tables-as-dataframes-in-r From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/18969420/perform-a-semi-join-with-data-table From: inst/doc/datatable-joins.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/20039335/what-is-the-purpose-of-setting-a-key-in-data-table/20057411#20057411 From: inst/doc/datatable-faq.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/20345022/convert-a-data-frame-to-a-data-table-without-copy From: man/setDT.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/22137591/about-gforce-in-data-table-1-9-2 From: inst/doc/datatable-sd-usage.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/258091/when-should-i-use-mmap-for-file-access From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/29658627/conditional-binary-join-and-update-by-reference-using-the-data-table-package From: inst/doc/datatable-sd-usage.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/31329939/conditional-keyed-join-update-and-update-a-flag-column-for-matches From: inst/doc/datatable-sd-usage.html Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/35179911/shift-in-data-table-v1-9-6-is-slow-for-many-groups From: NEWS.md Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/415515/how-can-i-read-and-manipulate-csv-file-data-in-c From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/45972/mmap-vs-reading-blocks From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/9061736/faster-than-scan-with-rcpp From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/9352887/strategies-for-reading-in-csv-files-in-pieces From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/9608950/reading-huge-files-using-memory-mapped-files From: man/fread.Rd Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/tagged/data.table From: README.md Status: 403 Message: Forbidden URL: https://stackoverflow.com/questions/tagged/data.table/ From: man/assign.Rd Status: 403 Message: Forbidden URL: https://www.gnu.org/software/gzip/manual/html_node/Invoking-gzip.html From: man/fwrite.Rd Status: Error Message: Timeout was reached [www.gnu.org]: Connection timed out after 60002 milliseconds Size of tarball: 5697127 bytes Check: compiled code, Result: NOTE File ‘data.table/libs/data_table.so’: Found non-API calls to R: ‘OBJECT’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Check: examples, Result: NOTE Examples with CPU time > 2.5 times elapsed time user system elapsed ratio groupingsets 4.598 0.102 0.985 4.772 Changes to worse in reverse depends: Package: GencoDymo2 Check: examples New result: ERROR Running examples in ‘GencoDymo2-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: get_latest_release > ### Title: Get the Latest Gencode Release Dynamically > ### Aliases: get_latest_release > > ### ** Examples > > # Retrieve the latest release version for human > human_release <- get_latest_release(species = "human", verbose = FALSE) Error in function (type, msg, asError = TRUE) : Failed to connect to ftp.ebi.ac.uk port 443 after 97 ms: Could not connect to server Calls: get_latest_release -> -> curlPerform -> -> fun Execution halted Package: NMsim Check: tests New result: ERROR Running ‘testthat.R’ [27s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(NMsim) NMsim 0.2.3. Browse NMsim documentation at https://NMautoverse.github.io/NMsim/ > > test_check("NMsim") [ FAIL 6 | WARN 0 | SKIP 0 | PASS 139 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_NMcreateMatLines.R:66:9'): Full covariance matrix ──────────── `res` has changed from known value recorded in 'testReference/NMcreateMatLines_03.rds'. 5/5 mismatches x[1]: " BLOCK(5) FIX 0.00421346" y[1]: " BLOCK(5) FIX 0.00253814" x[2]: "0.00216572 0.00341787" y[2]: "0.00113554 0.00292987" x[3]: "-0.0026693 -0.00208163 0.0119622" y[3]: "-0.00157543 -0.000280481 0.0263268" x[4]: "0.00802184 0.00513707 -0.0243139 0.076761" y[4]: "0.0044503 0.00198917 -0.0579947 0.159833" x[5]: "0.00111323 0.000867854 -0.0048564 0.0174466 0.00596833" y[5]: "0.0012677 0.000341358 -0.0203661 0.0535258 0.0195262" Backtrace: ▆ 1. └─testthat::expect_equal_to_reference(res, fileRef) at test_NMcreateMatLines.R:66:9 2. └─testthat::expect_known_value(..., update = update) ── Failure ('test_NMsim.R:295:9'): sizes ─────────────────────────────────────── `mod` has changed from known value recorded in 'testReference/NMsim_sizes_05.rds'. Lengths differ: 67 is not 66 Backtrace: ▆ 1. └─testthat::expect_equal_to_reference(mod, fileRef) at test_NMsim.R:295:9 2. └─testthat::expect_known_value(..., update = update) ── Failure ('test_NMsim.R:326:9'): inits - modify parameter ──────────────────── `mod` has changed from known value recorded in 'testReference/NMsim_inits_06.rds'. Lengths differ: 70 is not 69 Backtrace: ▆ 1. └─testthat::expect_equal_to_reference(mod, fileRef) at test_NMsim.R:326:9 2. └─testthat::expect_known_value(..., update = update) ── Failure ('test_NMsim_NWPRI.R:66:9'): NMsim_NWPRI ──────────────────────────── mod$THETAPV has changed from known value recorded in 'testReference/NMsim_NWPRI_01_THETAPV.rds'. 5/5 mismatches x[1]: "$THETAPV BLOCK(5) FIX 0.00421346" y[1]: "$THETAPV BLOCK(5) FIX 0.00253814" x[2]: "0.00216572 0.00341787" y[2]: "0.00113554 0.00292987" x[3]: "-0.0026693 -0.00208163 0.0119622" y[3]: "-0.00157543 -0.000280481 0.0263268" x[4]: "0.00802184 0.00513707 -0.0243139 0.076761" y[4]: "0.0044503 0.00198917 -0.0579947 0.159833" x[5]: "0.00111323 0.000867854 -0.0048564 0.0174466 0.00596833" y[5]: "0.0012677 0.000341358 -0.0203661 0.0535258 0.0195262" Backtrace: ▆ 1. └─testthat::expect_equal_to_reference(...) at test_NMsim_NWPRI.R:66:9 2. └─testthat::expect_known_value(..., update = update) ── Failure ('test_NMsim_NWPRI.R:68:9'): NMsim_NWPRI ──────────────────────────── `mod` has changed from known value recorded in 'testReference/NMsim_NWPRI_01.rds'. Component "THETAPV": 5 string mismatches Backtrace: ▆ 1. └─testthat::expect_equal_to_reference(mod, fileRef) at test_NMsim_NWPRI.R:68:9 2. └─testthat::expect_known_value(..., update = update) ── Failure ('test_NMsim_VarCov.R:68:5'): Basic ───────────────────────────────── `mod` has changed from known value recorded in 'testReference/NMsim_VarCov_01a.rds'. Component "SIGMA": 1 string mismatch Backtrace: ▆ 1. └─testthat::expect_equal_to_reference(mod, fileRef_a) at test_NMsim_VarCov.R:68:5 2. └─testthat::expect_known_value(..., update = update) [ FAIL 6 | WARN 0 | SKIP 0 | PASS 139 ] Error: Test failures Execution halted