* using log directory ‘/srv/hornik/tmp/CRAN/data.table.Rcheck’ * using R Under development (unstable) (2024-08-23 r87049) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘data.table/DESCRIPTION’ ... OK * this is package ‘data.table’ version ‘1.16.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [8s/127s] NOTE Maintainer: ‘Tyson Barrett ’ Found the following (possibly) invalid URLs: URL: https://cran.r-project.org/web/packages/data.table/vignettes/datatable-reference-semantics.html From: inst/doc/datatable-sd-usage.html Status: 200 Message: OK CRAN URL not in canonical form URL: https://cran.r-project.org/web/packages/data.table/vignettes/datatable-sd-usage.html From: inst/doc/datatable-reference-semantics.html Status: 200 Message: OK CRAN URL not in canonical form URL: https://github.com/IRkernel/IRkernel/issues/127 From: man/shouldPrint.Rd Status: Error Message: Send failure: Broken pipe URL: https://github.com/Rdatatable/data.table/blob/master/inst/tests/tests.Rraw#L444-L447 From: inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/blob/master/src/fread.c From: inst/doc/datatable-importing.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/blob/master/src/fwrite.c From: inst/doc/datatable-importing.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues From: DESCRIPTION inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1115 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1197 From: inst/doc/datatable-sd-usage.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1215 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1321 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1414 From: inst/doc/datatable-sd-usage.html NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1523 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1534 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1597 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1632 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1664 From: man/fwrite.Rd Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1686 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1732 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1812 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/1994 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2256 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2273 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2341 From: inst/doc/datatable-importing.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2394 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2422 From: inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2431 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2526 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2551 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2574 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2575 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2587 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2594 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2655 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2655#issuecomment-376781159 From: inst/doc/datatable-programming.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2691 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2727 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2778 From: inst/doc/datatable-sd-usage.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2842 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2927 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2947 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/2964 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3011 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3060 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3109 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3189 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3241 From: man/froll.Rd Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3396 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3436 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3502 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3594 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3666 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3702 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3705 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3727 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3795 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3834 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3911 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/3977 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/4027 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/4029 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/4083 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/4086 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/4115 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/4348 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5044 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5378 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5392 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5512 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5547 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5604 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5654 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5824 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5935 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/5977 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6014 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6032 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6172 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6180 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6224 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6304 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/6352 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/647 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/735 From: inst/doc/datatable-sd-usage.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/795 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/869 From: inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/933 From: man/shouldPrint.Rd Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/issues/944 From: man/data.table.Rd Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/milestone/30 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/1613 From: man/fwrite.Rd Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/1770 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/2402 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/2456 From: inst/doc/datatable-importing.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/2545 From: inst/doc/datatable-sd-usage.html Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/4198 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/4282 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/4864 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5046 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5053 From: NEWS.md Status: Error Message: Operation timed out after 60000 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5054 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5105 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5189 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5463 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5501 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/5932 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/pull/6328 From: NEWS.md Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/Rdatatable/data.table/wiki/Support From: man/data.table.Rd inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60003 milliseconds with 0 bytes received URL: https://github.com/arunsrinivasan/flights From: inst/doc/datatable-intro.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/cdalzell/Lahman From: inst/doc/datatable-sd-usage.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/emscripten-core/emscripten/issues/20459 From: NEWS.md Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/h2oai/db-benchmark From: NEWS.md Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/orgs/Rdatatable/teams/brazil From: NEWS.md Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/orgs/Rdatatable/teams/spanish From: NEWS.md Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/r-lib/devtools/issues/1472 From: inst/doc/datatable-importing.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/r-lib/devtools/issues/192 From: inst/doc/datatable-importing.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/tidyverse/dtplyr/issues/184 From: NEWS.md Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/tidyverse/nycflights13 From: inst/doc/datatable-intro.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/wch/r-source/blob/trunk/src/main/eval.c From: inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received URL: https://github.com/wch/r-source/blob/trunk/src/main/names.c From: inst/doc/datatable-faq.html Status: Error Message: Operation timed out after 60002 milliseconds with 0 bytes received The canonical URL of the CRAN page for a package is https://CRAN.R-project.org/package=pkgname Size of tarball: 5191846 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘data.table’ can be installed ... [19s/19s] OK * used C compiler: ‘Debian clang version 18.1.8 (9)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... NOTE File ‘data.table/libs/data_table.so’: Found non-API calls to R: ‘LEVELS’, ‘NAMED’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘STRING_PTR’, ‘TRUELENGTH’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/5s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [41s/42s] OK Running ‘S4.R’ [0s/0s] Running ‘autoprint.R’ [0s/0s] Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ [9s/9s] Running ‘knitr.R’ [0s/0s] Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ [30s/30s] Running ‘nafill.R’ [0s/0s] Running ‘other.R’ [0s/0s] Running ‘programming.R’ [1s/1s] Running ‘types.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [26s/26s] OK * checking PDF version of manual ... [5s/5s] OK * checking HTML version of manual ... [2s/2s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs