* using log directory 'd:/RCompile/CRANincoming/R-devel/darkroast.Rcheck'
* using R Under development (unstable) (2025-01-24 r87627 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'darkroast/DESCRIPTION' ... OK
* this is package 'darkroast' version '1.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Matthew Hofkes <mhofkes@mines.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  detrend (15:3)
  frequentist (16:45)

Package has a VignetteBuilder field but no prebuilt vignette index.

The Date field is over a month old.

This build time stamp is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... INFO
Vignette dependency required without any vignettes: 'knitr'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'darkroast' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    'Matthew Hofkes [aut, cre]'
  Authors@R: 'Hofkes Matthew [aut, cre]'

Maintainer field differs from that derived from Authors@R
  Maintainer: 'Matthew Hofkes <mhofkes@mines.edu>'
  Authors@R:  'Hofkes Matthew <mhofkes@mines.edu>'

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'BayesianSmoother2D.Rd':
  \usage lines wider than 90 characters:
         x1, x2, Y, covariates = FALSE, chain.length = 2000, burn.in = 1000, nugget.prior = "Weak",

Rd file 'HybridSmoother1D.Rd':
  \usage lines wider than 90 characters:
     HybridSmoother1D(x, y, lambda.grid, omega.grid, tolerance = 1e-4, initial.gamma.guess = rep(0, length(x) - 1), method = "AICc", constru ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BayesianSmoother2D.Rd: Tps, spatialProcess
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... NOTE
File 'data/datalist' is out-of-date:
  Data objects in 'datalist' not in 'data' directory:
    Headloss RoughSmoothSurface
  Data objects in 'data' directory not in 'datalist':
    anomalous.headloss.cycles regular.headloss.cycles X1.grid X2.grid Y
Please re-create using tools::add_datalist(force = TRUE).
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [177s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                          user system elapsed
HybridBayesianSmoother2D 68.40  10.00   78.44
BayesianSmoother2D       46.59   6.47   53.08
ConvergenceCheck         34.34   4.46   38.80
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 6 NOTEs