downloading reverse dependencies ... downloading explainer_1.0.2.tar.gz ... ok downloading oHMMed_1.0.2.tar.gz ... ok downloading priorityelasticnet_0.2.0.tar.gz ... ok installing dependencies ‘AUC’, ‘cvms’, ‘glmSparseNet’, ‘groupdata2’, ‘ipflasso’, ‘merDeriv’, ‘mistr’, ‘mlr3viz’, ‘precrec’, ‘rearrr’, ‘xpectr’ also installing the dependencies ‘BiocBaseUtils’, ‘GenomicDataCommons’, ‘RaggedExperiment’, ‘nonnest2’, ‘MultiAssayExperiment’, ‘TCGAutils’ begin installing package ‘GenomicDataCommons’ begin installing package ‘nonnest2’ begin installing package ‘BiocBaseUtils’ begin installing package ‘rearrr’ begin installing package ‘AUC’ begin installing package ‘xpectr’ begin installing package ‘mlr3viz’ begin installing package ‘precrec’ begin installing package ‘mistr’ begin installing package ‘ipflasso’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.10.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘RaggedExperiment’ begin installing package ‘MultiAssayExperiment’ * installing *source* package ‘AUC’ ... ** this is package ‘AUC’ version ‘0.3.2’ ** package ‘AUC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AUC) * installing *source* package ‘nonnest2’ ... ** this is package ‘nonnest2’ version ‘0.5-8’ ** package ‘nonnest2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nonnest2) begin installing package ‘merDeriv’ * installing *source* package ‘ipflasso’ ... ** this is package ‘ipflasso’ version ‘1.1’ ** package ‘ipflasso’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ipflasso) * installing *source* package ‘xpectr’ ... ** this is package ‘xpectr’ version ‘0.4.4’ ** package ‘xpectr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xpectr) * installing *source* package ‘mlr3viz’ ... ** this is package ‘mlr3viz’ version ‘0.10.1’ ** package ‘mlr3viz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3viz) * installing *source* package ‘rearrr’ ... ** this is package ‘rearrr’ version ‘0.3.5’ ** package ‘rearrr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rearrr) begin installing package ‘groupdata2’ * installing *source* package ‘merDeriv’ ... ** this is package ‘merDeriv’ version ‘0.2-5’ ** package ‘merDeriv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (merDeriv) * installing *source* package ‘mistr’ ... ** this is package ‘mistr’ version ‘0.0.6’ ** package ‘mistr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mistr) * installing *source* package ‘GenomicDataCommons’ ... ** this is package ‘GenomicDataCommons’ version ‘1.32.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicDataCommons) * installing *source* package ‘groupdata2’ ... ** this is package ‘groupdata2’ version ‘2.0.5’ ** package ‘groupdata2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'floor' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (groupdata2) begin installing package ‘cvms’ * installing *source* package ‘RaggedExperiment’ ... ** this is package ‘RaggedExperiment’ version ‘1.32.2’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RaggedExperiment) * installing *source* package ‘cvms’ ... ** this is package ‘cvms’ version ‘1.8.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cvms) * installing *source* package ‘precrec’ ... ** this is package ‘precrec’ version ‘0.14.5’ ** package ‘precrec’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3NcHeM/R.INSTALL216bc14cd44ceb/precrec/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c precrec_misc.cpp -o precrec_misc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c precrec_mmx.cpp -o precrec_mmx.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c precrec_plx.cpp -o precrec_plx.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o precrec.so RcppExports.o precrec_misc.o precrec_mmx.o precrec_plx.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3NcHeM/R.INSTALL216bc14cd44ceb/precrec/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-precrec/00new/precrec/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (precrec) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.34.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) begin installing package ‘TCGAutils’ * installing *source* package ‘TCGAutils’ ... ** this is package ‘TCGAutils’ version ‘1.28.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TCGAutils) begin installing package ‘glmSparseNet’ * installing *source* package ‘glmSparseNet’ ... ** this is package ‘glmSparseNet’ version ‘1.26.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmSparseNet) checking cvms_1.8.0.tar.gz ... checking explainer_1.0.2.tar.gz ... checking oHMMed_1.0.2.tar.gz ... checking priorityelasticnet_0.2.0.tar.gz ... Depends: Package: cvms Depends: R (>= 3.5) Imports: checkmate (>= 2.0.0), data.table (>= 1.12), dplyr (>= 0.8.5), ggplot2, groupdata2 (>= 2.0.5), lifecycle, lme4 (>= 1.1-23), MuMIn (>= 1.43.17), parameters (>= 0.15.0), plyr, pROC (>= 1.16.0), purrr, rearrr (>= 0.3.4), recipes (>= 0.1.13), rlang (>= 0.4.7), stats, stringr, tibble (>= 3.0.3), tidyr (>= 1.1.2), utils Timings: user system elapsed cvms 226.713 8.783 240.587 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 3 Check results summary: cvms ... NOTE * checking CRAN incoming feasibility ... [7s/11s] NOTE rdepends_explainer ... OK rdepends_oHMMed ... OK rdepends_priorityelasticnet ... OK