effect4tolerance <- function(tolerance) { mf <- epx(minnow_it,level=50,effect_tolerance=tolerance,ep_only=TRUE)[[1,1]] effect(minnow_it, factor=mf, ep_only=TRUE) } test_that("effect levels", { # avoid some common bogus messages on package load suppressMessages(suppressWarnings(require(purrr, quietly=TRUE))) ## requested effect levels expect_named(epx(minnow_it,level=23),c("scenario","L.EP23")) expect_named(epx(minnow_it,level=c(10,20)),c("scenario","L.EP10","L.EP20")) }) test_that("effect_tolerance", { ## effect.tolerance ## result are getting more precise if we decrease the tolerance exact <- effect4tolerance(1e-10) expect_gt(abs(exact-effect4tolerance(1e-1)), abs(exact-effect4tolerance(1e-2))) expect_gt(abs(exact - effect4tolerance(1e-1)), 0.01) expect_lt(abs(exact - effect4tolerance(1e-1)), 1e-1) expect_lt(abs(exact - effect4tolerance(1e-2)), 1e-2) expect_lt(abs(exact - effect4tolerance(1e-3)), 1e-3) expect_lt(abs(exact - effect4tolerance(1e-4)), 1e-4) rm(exact) }) test_that("min/max factor", { scen <- set_exposure(minnow_it, data.frame(t=1:5,c=1e-5)) # low exposure expect_warning(epx(scen,level=50,max_factor=1e3),regexp="multiplication factor out of range") scen <- set_exposure(minnow_it, data.frame(t=1:5,c=1e5)) # high exposure expect_warning(epx(scen,level=50,min_factor=1e-3),regexp="multiplication factor out of range") rm(scen) # one of two effect level fails, i.e. BM.EP50 expect_warning(metsulfuron %>% set_endpoints("BM") %>% epx()) suppressWarnings(rs <- metsulfuron %>% set_endpoints("BM") %>% epx()) expect_equal(rs[[1,"BM.EP10"]], 0.395, tolerance=0.1) expect_equal(rs[[1,"BM.EP50"]], NA_real_) }) test_that("factor cutoff", { cutoff <- 2000 scen <- set_exposure(minnow_it, data.frame(t=1:5,c=1e-5)) expect_true(all(epx(scen,ep_only=TRUE) > cutoff)) expect_true(all(epx(scen,factor_cutoff=cutoff,ep_only=TRUE) == cutoff)) rm(cutoff) }) test_that("ep_only", { source(test_path("dummy.R"), local = TRUE) sc <- new("DummyScenario", endpoints="foo", fx=function(scenario, ...) { return(c(foo=scenario@exposure@series[1, 2])) }) # single scenario, single EPx level rs <- epx(sc, level=10, ep_only=TRUE) expect_equal(nrow(rs), 1) expect_equal(names(rs), "foo.EP10") expect_equal(rs[[1, 1]], 0.1) # two scenarios, a two EPx levels rs <- epx(c(sc, sc), level=c(10, 50), ep_only=TRUE, effect_tolerance = 1e-5) expect_equal(nrow(rs), 2) expect_equal(names(rs), c("foo.EP10","foo.EP50")) expect_equal(rs[[1, 1]], 0.1) expect_equal(rs[[1, 2]], 0.5, tolerance=1e-5) }) test_that("long_format", { source(test_path("dummy.R"), local = TRUE) sc <- new("DummyScenario", endpoints="foo", fx=function(scenario, ...) { return(c(foo=scenario@exposure@series[1, 2])) }) # single scenario, single EPx level rs <- epx(sc, level=10, long_format=TRUE) expect_equal(nrow(rs), 1) expect_equal(names(rs), c("scenario","endpoint","level","EPx")) # single scenario, two EPx levels rs <- epx(sc, level=c(10, 50), long_format=TRUE) expect_equal(nrow(rs), 2) # two scenarios, a two EPx levels rs <- epx(c(sc,sc), level=c(10, 50), long_format=TRUE) expect_equal(nrow(rs), 4) expect_equal(names(rs), c("scenario","endpoint","level","EPx")) # again, but only endpoints=TRUE rs <- epx(c(sc,sc), level=c(10, 50), long_format=TRUE, ep_only=TRUE) expect_equal(nrow(rs), 4) expect_equal(names(rs), c("endpoint","level","EPx")) }) test_that("error handling", { source(test_path("dummy.R"), local = TRUE) # single scenario, simulation fails sc <- new("DummyScenario", endpoints="foo", fx=function(...) stop("planned error")) expect_warning(rs <- epx(sc, level=10)) expect_equal(names(rs), c("scenario","foo.EP10", "error")) expect_true(is.na(rs[['foo.EP10']])) expect_equal(rs[['error']], "planned error") # single scenario, two levels, one without valid results sc <- new("DummyScenario", endpoints="foo", fx=function(scenario, ...) { c <- scenario@exposure@series[1, 2] if(c > 60) return(NA_real_) return(c(foo=c/100)) }) expect_warning(rs <- epx(sc, level=c(10,90)), "Some scenarios have failed") expect_equal(names(rs), c("scenario","foo.EP10", "foo.EP90")) expect_equal(rs[['foo.EP10']], 10) expect_true(is.na(rs[['foo.EP90']])) # two scenarios, one passes, one fails sc1 <- new("DummyScenario", endpoints="foo", simulate=function(...) stop("planned error")) sc2 <- new("DummyScenario", endpoints="foo", fx=function(scenario, ...) { return(c(foo=scenario@exposure@series[1, 2])) }) expect_warning(rs <- epx(list(sc1, sc2))) # continue with warning expect_true(all(!is.na(rs[2,c("foo.EP10","foo.EP50")]))) # EPx present expect_true(is.na(rs[2,"error"])) # no error msg expect_true(all(is.na(rs[1,c("foo.EP10","foo.EP50")]))) # no EPx expect_true(!is.na(rs[1,"error"])) # error msg rm(rs) # two scenarios, both failed expect_warning(rs <- epx(list(sc1, sc1), level=10)) expect_equal(names(rs), c("scenario","foo.EP10", "error")) expect_true(all(is.na(rs[1:2,2]))) expect_true(all(!is.na(rs[1:2,3]))) })