# simulations to verify the model implementation test_that("verify: constant exposure", { source(test_path("init-simulate_Daphnia.R"), local=TRUE) param <- tfs_param param$f <- 0.88 tfs_result %>% dplyr::filter(set=="set3" & run=="control") %>% dplyr::pull(time) -> times for(i in seq(2, length(tfs_exposure$cst))) { exposure <- tfs_exposure$cst[,c(1,i)] DEBtox() %>% set_init(tfs_init) %>% set_param(param) %>% set_times(times) %>% set_exposure(exposure, reset_times = FALSE) %>% simulate(nout=0) -> out runstr <- ifelse(i == 2, "control", paste0("CST_",(i-2))) tfs_result %>% dplyr::filter(set == "set3" & run == runstr) %>% dplyr::select(!c(set, run)) -> verify expect_equal(out, verify, tolerance=0.1, ignore_attr=TRUE) } }) test_that("verify: variable exposure 1", { source(test_path("init-simulate_Daphnia.R"), local=TRUE) tfs_result %>% dplyr::filter(set=="set1" & run=="control") %>% dplyr::pull(time) -> times for(i in seq(2, length(tfs_exposure$var1))) { exposure <- tfs_exposure$var1[,c(1,i)] DEBtox() %>% set_init(tfs_init) %>% set_param(tfs_param) %>% set_times(times) %>% set_exposure(exposure, reset_times = FALSE) %>% simulate() -> out runstr <- ifelse(i == 2, "control", paste0("VAR1_",(i-2))) tfs_result %>% dplyr::filter(set == "set1" & run == runstr) %>% dplyr::select(!c(set, run)) -> verify expect_equal(out, verify, tolerance=1e-3, ignore_attr=TRUE) } }) test_that("verify: variable exposure 2", { source(test_path("init-simulate_Daphnia.R"), local=TRUE) tfs_result %>% dplyr::filter(set=="set2" & run=="control") %>% dplyr::pull(time) -> times for(i in seq(2, length(tfs_exposure$var1))) { exposure <- tfs_exposure$var2[,c(1,i)] DEBtox() %>% set_init(tfs_init) %>% set_param(tfs_param) %>% set_times(times) %>% set_exposure(exposure, reset_times = FALSE) %>% simulate(hmax=0.01) -> out runstr <- ifelse(i == 2, "control", paste0("VAR2_",(i-2))) tfs_result %>% dplyr::filter(set == "set2" & run == runstr) %>% dplyr::select(!c(set, run)) -> verify expect_equal(out, verify, tolerance=1e-3, ignore_attr=TRUE) } }) # model behavior test_that("brood-pouch delay", { source(test_path("init-simulate_Daphnia.R"), local=TRUE) # irregular time points dmagna %>% set_param(c(Tbp=3)) %>% simulate() -> res_bp dmagna %>% set_param(c(Tbp=0)) %>% simulate() -> res_no # last time point with zero reproduction should be roughly shifted by Tbp expect_equal( res_bp %>% dplyr::filter(R==0) %>% dplyr::pull(time) %>% max(), res_no %>% dplyr::filter(R==0) %>% dplyr::pull(time) %>% max() + 3, tolerance=0.1 ) expect_equal(res_bp$L, res_no$L) # regular time points dmagna %>% set_times(0:21) %>% set_param(c(Tbp=3)) %>% simulate() -> res_bp dmagna %>% set_times(0:21) %>% set_param(c(Tbp=0)) %>% simulate() -> res_no expect_equal( res_bp %>% dplyr::filter(R==0) %>% dplyr::pull(time) %>% max(), res_no %>% dplyr::filter(R==0) %>% dplyr::pull(time) %>% max() + 3 ) expect_equal(tail(res_bp$R, 19), head(res_no$R, 19)) expect_equal(res_bp$L, res_no$L) })