effect4tolerance <- function(tolerance) { mf <- epx(minnow_it,level=50,effect_tolerance=tolerance,ep_only=TRUE)[[1,1]] effect(minnow_it, factor=mf, ep_only=TRUE) } test_that("effect levels", { ## requested effect levels expect_named(epx(minnow_it,level=23),c("scenario","L.EP23")) expect_named(epx(minnow_it,level=c(10,20)),c("scenario","L.EP10","L.EP20")) }) test_that("effect_tolerance", { ## effect.tolerance ## result are geting more precise if we decrease the tolerance exact <- effect4tolerance(1e-10) expect_gt(abs(exact-effect4tolerance(1e-1)), abs(exact-effect4tolerance(1e-2))) expect_gt(abs(exact - effect4tolerance(1e-1)), 0.01) expect_lt(abs(exact - effect4tolerance(1e-1)), 1e-1) expect_lt(abs(exact - effect4tolerance(1e-2)), 1e-2) expect_lt(abs(exact - effect4tolerance(1e-3)), 1e-3) expect_lt(abs(exact - effect4tolerance(1e-4)), 1e-4) rm(exact) }) test_that("min/max factor", { scen <- set_exposure(minnow_it, data.frame(t=1:5,c=1e-5)) # low exposure expect_warning(epx(scen,level=50,max_factor=1e3),regexp="multiplication factor out of range") scen <- set_exposure(minnow_it, data.frame(t=1:5,c=1e5)) # high exposure expect_warning(epx(scen,level=50,min_factor=1e-3),regexp="multiplication factor out of range") rm(scen) # one of two effect level fails, i.e. BM.EP50 expect_warning(metsulfuron %>% set_endpoints("BM") %>% epx()) suppressWarnings(rs <- metsulfuron %>% set_endpoints("BM") %>% epx()) expect_equal(rs[[1,"BM.EP10"]], 0.395, tolerance=0.1) expect_equal(rs[[1,"BM.EP50"]], NA_real_) }) test_that("factor cutoff", { cutoff <- 2000 scen <- set_exposure(minnow_it, data.frame(t=1:5,c=1e-5)) expect_true(all(epx(scen,ep_only=TRUE) > cutoff)) expect_true(all(epx(scen,factor_cutoff=cutoff,ep_only=TRUE) == cutoff)) rm(cutoff) }) test_that("ep_only", { source(test_path("class-DummyScenario.R")) sc <- DummyScenario() # single scenario, single EPx level rs <- epx(sc, level=10, ep_only=TRUE) expect_equal(nrow(rs), 1) expect_equal(names(rs), c("L.EP10")) # two scenarios, a two EPx levels rs <- epx(c(sc, sc), level=c(10, 50), ep_only=TRUE) expect_equal(nrow(rs), 2) expect_equal(names(rs), c("L.EP10","L.EP50")) }) test_that("long_format", { source(test_path("class-DummyScenario.R")) sc <- DummyScenario() %>% set_exposure(data.frame(t=0, c=1)) # single scenario, single EPx level rs <- epx(sc, level=10, long_format=TRUE) expect_equal(nrow(rs), 1) expect_equal(names(rs), c("scenario","endpoint","level","EPx")) # single scenario, two EPx levels rs <- epx(sc, level=c(10, 50), long_format=TRUE) expect_equal(nrow(rs), 2) # two scenarios, a two EPx levels rs <- epx(c(sc,sc), level=c(10, 50), long_format=TRUE) expect_equal(nrow(rs), 4) expect_equal(names(rs), c("scenario","endpoint","level","EPx")) # again, but only endpoints=TRUE rs <- epx(c(sc,sc), level=c(10, 50), long_format=TRUE, ep_only=TRUE) expect_equal(nrow(rs), 4) expect_equal(names(rs), c("endpoint","level","EPx")) }) test_that("error handling", { source(test_path("class-DummyScenario.R")) # only a single scenario and it failed expect_warning(rs <- epx(DummyFails(), level=10)) expect_equal(names(rs), c("scenario","L.EP10", "error")) expect_true(is.na(rs[['L.EP10']])) # single actual scenario, two levels, one fails expect_warning(rs <- epx(set_endpoints(metsulfuron,"BM"), level=c(10,50))) expect_equal(names(rs), c("scenario","BM.EP10", "BM.EP50", "error")) expect_true(is.na(rs[['BM.EP50']])) # two scenarios, one passed, one failed scen <- c(DummyScenario(), DummyFails()) expect_warning(epx(scen) -> rs) # continue with warning expect_true(all(!is.na(rs[1,c("L.EP10","L.EP50")]))) # EPx present expect_true(is.na(rs[1,"error"])) # no error msg expect_true(all(is.na(rs[2,c("L.EP10","L.EP50")]))) # no EPx expect_true(!is.na(rs[2,"error"])) # error msg rm(scen,rs) # two scenarios, both failed expect_warning(rs <- epx(c(DummyFails(), DummyFails()), level=10)) expect_equal(names(rs), c("scenario","L.EP10", "error")) expect_true(all(is.na(rs[1:2,2]))) expect_true(all(!is.na(rs[1:2,3]))) })