* using log directory ‘/srv/hornik/tmp/CRAN/curesurv.Rcheck’
* using R Under development (unstable) (2024-06-20 r86796)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘curesurv/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘curesurv’ version ‘0.1.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Juste Goungounga <juste.goungounga@ehesp.fr>’

New submission

License components with restrictions and base license permitting such:
  GPL (>= 3) + file LICENSE
File 'LICENSE':
  YEAR: 2022
  COPYRIGHT HOLDER: curesurv authors

Possibly misspelled words in DESCRIPTION:
  Boussari (15:322)
  al (15:135, 15:334)
  et (15:132, 15:331)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘curesurv’ can be installed ... [14s/14s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [33s/33s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) inc.beta.deriv.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{I_{pp}}{\eqn{I_{x,p,q}^{pp}} denotes the second derivative of the incomplete
       |         ^
checkRd: (-1) inc.beta.deriv.Rd:43: Lost braces; missing escapes or markup?
    43 | \item{I_{q}}{\eqn{I_{x,p,q}^{q}} denotes the first derivative of the incomplete
       |         ^
checkRd: (-1) inc.beta.deriv.Rd:45: Lost braces; missing escapes or markup?
    45 | \item{I_{qq}}{\eqn{I_{x,p,q}^{qq}} denotes the second derivative of the incomplete
       |         ^
checkRd: (-1) inc.beta.deriv.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{I_{pq}}{\eqn{I_{x,p,q}^{pq}} denotes the first derivative of the incomplete
       |         ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  curesurv.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [34s/34s] OK
* checking PDF version of manual ... [6s/6s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Missing { inserted.
<to be read again> 
                   \mathop 
l.368 ... (t) ^{\gamma}\}) ^ \exp(\{\delta Z\})}{}
                                                  .
! Missing } inserted.
<inserted text> 
                }
l.368 ... (t) ^{\gamma}\}) ^ \exp(\{\delta Z\})}{}
                                                  .
! Missing $ inserted.
<inserted text> 
                $
l.371 ...beta) + (1 - \pi(z;\beta)) * S_{u}(t)}}{}
                                                  .
! Text line contains an invalid character.
l.573 ^^?
         
A funny symbol that I can't read has just been input.
Continue, and I'll forget that it ever happened.
! Undefined control sequence.
<argument> frac{d ln(\Tau 
                          (x))}{dx} = \frac {\Tau ^'(x)}{\Tau (x)}
l.871 ...u(x))}{dx} = \frac{\Tau^'(x)}{\Tau(x)}}{}
                                                  .
! Undefined control sequence.
<argument> \Tau 
                ^'(x)
l.871 ...u(x))}{dx} = \frac{\Tau^'(x)}{\Tau(x)}}{}
                                                  .
! Missing { inserted.
<to be read again> 
                   ^
l.871 ...u(x))}{dx} = \frac{\Tau^'(x)}{\Tau(x)}}{}
                                                  .
! Missing } inserted.
<inserted text> 
                }
l.871 ...u(x))}{dx} = \frac{\Tau^'(x)}{\Tau(x)}}{}
                                                  .
! Undefined control sequence.
<argument> \Tau 
                (x)
l.871 ...u(x))}{dx} = \frac{\Tau^'(x)}{\Tau(x)}}{}
                                                  .
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ≥ (U+2265)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... [2s/2s] NOTE
Found the following math rendering problems:
curesurv.Rd:203: Got function '\exp' with no arguments as superscript in ...^{\gamma}\}) ^ \exp(\{\delta Z\})
curesurv.Rd:206: Undefined control sequence: \eqn in \eqn{S_{E}(t) = \pi...
digamma.Rd:17: Expected group after '^' in ...x} = \frac{\Tau^'(x)}{\Tau(x)}
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘curesurv-manual.tex’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 5 NOTEs