* installing *source* package ‘ctsem’ ...
** using staged installation
DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

** libs
using C++ compiler: ‘Debian clang version 16.0.6 (11)’
using C++17


clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/CholmodSupport:45:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
22 warnings generated.


clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0   -fpic  -g -O3 -Wall -pedantic -c stanExports_cov.cc -o stanExports_cov.o
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/CholmodSupport:45:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:6:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable]
  bool error = false;
       ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:54:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/profiling.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable]
  int n_transitions = log_omegas.cols() - 1;
      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable]
  double neg_root_5 = -root_5;
         ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable]
  const int N = stan::math::size(theta);
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable]
  size_t N = max_size(y, mu, sigma);
         ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable]
  int n = G.rows();  // number of states
      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable]
  const int n_states = omegas.rows();
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable]
  static const char* function = "std_normal_rng";
                     ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable]
  double ck = 50;
         ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
    int ret = stan::services::error_codes::CONFIG;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable]
  const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols());
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable]
  const Eigen::Index x_cols = x.cols();
                     ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
  vi_ = (*this - b).vi_;
               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value<double>::operator-=' requested here
    re_ -= x;
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base<stan::math::var_value<double>>::operator-=<int>' requested here
  y -= rhs;
    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract<std::complex<stan::math::var>, int>' requested here
  return internal::complex_subtract(x, y);
                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-<stan::math::var_value<double>, int>' requested here
  auto y = log(z + sqrt(z * z - 1));
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh<stan::math::var_value<double>>' requested here
  return stan::math::internal::complex_acosh(z);
                               ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+<int, nullptr>' requested here
    grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z);
                                          ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+<double, nullptr>' requested here
    value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x));
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl<stan::math::var_value<double>>' requested here
inline var trigamma(const var& u) { return trigamma_impl(u); }
                                           ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_cov.h:735:429: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, -1, 1, 0> &, nullptr>' requested here
                                multi_normal_log(stan::model::rvalue(dat, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::nil_index_list())), "dat"), stan::model::rvalue(mu, stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::nil_index_list()), "mu"), stan::model::rvalue(covm, stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::nil_index_list())), "covm")), 
                                                                                                                                                                                                                                                                                                                                                                                                                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/random_var_context.hpp:77:11: note: in instantiation of function template specialization 'model_cov_namespace::model_cov::write_array<boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    model.write_array(rng, unconstrained_params_, int_params,
          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:93:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
      stan::io::random_var_context random_context(model, rng, init_radius,
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_cov_namespace::model_cov>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_cov.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
        container_operands_(index_apply<N_containers>([&, this](auto... Is) {
                                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
    return new precomputed_gradients_vari_template<
               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0> &, const stan::math::var_value<double> &, const int &, double, double, stan::math::var_value<double>>::build' requested here
  return ops_partials.build(logp);
                      ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:120:10: note: in instantiation of function template specialization 'stan::math::normal_lpdf<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, stan::math::var_value<double>, int, nullptr>' requested here
  return normal_lpdf<false>(y, mu, sigma);
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_log.hpp:45:10: note: in instantiation of function template specialization 'stan::math::normal_lpdf<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, stan::math::var_value<double>, int>' requested here
  return normal_lpdf<T_y, T_loc, T_scale>(y, mu, sigma);
         ^
./stanExports_cov.h:483:40: note: in instantiation of function template specialization 'stan::math::normal_log<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, stan::math::var_value<double>, int>' requested here
            stan::math::assign(sdprior,normal_log(logsd, mean(logsd), 10));
                                       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all)
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_cov_namespace::model_cov>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_cov_namespace::model_cov>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_cov.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
        container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
                                                           ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
./stanExports_cov.h:170:65: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
            stan::math::assign(r3, ((stan::math::fabs(r2) / r1) - 1));
                                                                ^
./stanExports_cov.h:494:53: note: in instantiation of function template specialization 'model_cov_namespace::constraincorsqrt<stan::math::var_value<double>>' requested here
                stan::math::assign(mcor, tcrossprod(constraincorsqrt(rawcor, d, pstream__)));
                                                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_cov_namespace::model_cov::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_cov_namespace::model_cov>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_cov_namespace::model_cov>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_cov.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture]
                            [bvi = b.vi_, a](const auto& vi) mutable {
                                          ^
./stanExports_cov.h:199:46: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
                        stan::math::sqrt(((1 - sum(square(stan::model::rvalue(o, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_omni(), stan::model::nil_index_list())), "o")))) + 1e-5)), 
                                             ^
./stanExports_cov.h:494:53: note: in instantiation of function template specialization 'model_cov_namespace::constraincorsqrt<stan::math::var_value<double>>' requested here
                stan::math::assign(mcor, tcrossprod(constraincorsqrt(rawcor, d, pstream__)));
                                                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_cov_namespace::model_cov::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_cov_namespace::model_cov>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_cov_namespace::model_cov>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_cov.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_cov.h:520:429: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0> &, nullptr>' requested here
                                multi_normal_log(stan::model::rvalue(dat, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::nil_index_list())), "dat"), stan::model::rvalue(mu, stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::nil_index_list()), "mu"), stan::model::rvalue(covm, stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::cons_list(stan::model::index_multi(stan::model::rvalue(obs, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_min_max(1, get_base1(nobs, i, "nobs", 1)), stan::model::nil_index_list())), "obs")), stan::model::nil_index_list())), "covm")), 
                                                                                                                                                                                                                                                                                                                                                                                                                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_cov_namespace::model_cov::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_cov_namespace::model_cov>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_cov_namespace::model_cov>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_cov.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture]
                            [bvi = b.vi_, a](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:332:128: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
                                                                                                                               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:719:12: note: in instantiation of member function 'Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>::operator()' requested here
    return m_functor(m_lhsImpl.coeff(index), m_rhsImpl.coeff(index));
           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:56: note: in instantiation of member function 'Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Transpose<const Eigen::Matrix<double, 1, -1, 1>>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, stan::math::var_value<double>>::coeff' requested here
    m_functor.assignCoeff(m_dst.coeffRef(index), m_src.coeff(index));
                                                       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:497:14: note: in instantiation of member function 'Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>>, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Transpose<const Eigen::Matrix<double, 1, -1, 1>>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>>, Eigen::internal::assign_op<stan::math::var_value<double>, stan::math::var_value<double>>>::assignCoeff' requested here
      kernel.assignCoeff(i);
             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>>, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Transpose<const Eigen::Matrix<double, 1, -1, 1>>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>>, Eigen::internal::assign_op<stan::math::var_value<double>, stan::math::var_value<double>>>, 1, 0>::run' requested here
  dense_assignment_loop<Kernel>::run(kernel);
                                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:5: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
    call_dense_assignment_loop(dst, src, func);
    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_cov_namespace::model_cov>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_cov_namespace::model_cov>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_cov.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_cov_namespace::model_cov, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
static void set_zero_all_adjoints() {
            ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
  using value_t = value_type_t<EigMat>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
  using idx_t = index_type_t<std::vector<T>>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef]
    using Block_ = Eigen::Block<Eigen::MatrixXd>;
          ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef]
  using T_scalar = value_type_t<T>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
  using value_t = value_type_t<VarMat>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef]
  using T_y_val =
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef]
  using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
  using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, -1, 1>;
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
  using T_alpha_val = typename std::conditional_t<
        ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef]
  using pair_type = std::pair<int, arena_vec>;
        ^
In file included from stanExports_cov.cc:5:
./stanExports_cov.h:355:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
        typedef double local_scalar_t__;
                       ^
69 warnings generated.


clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0   -fpic  -g -O3 -Wall -pedantic -c stanExports_ctsm.cc -o stanExports_ctsm.o
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/CholmodSupport:45:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:6:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable]
  bool error = false;
       ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:54:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/profiling.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable]
  int n_transitions = log_omegas.cols() - 1;
      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable]
  double neg_root_5 = -root_5;
         ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable]
  const int N = stan::math::size(theta);
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable]
  size_t N = max_size(y, mu, sigma);
         ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable]
  int n = G.rows();  // number of states
      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable]
  const int n_states = omegas.rows();
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable]
  static const char* function = "std_normal_rng";
                     ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable]
  double ck = 50;
         ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
    int ret = stan::services::error_codes::CONFIG;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable]
  const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols());
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable]
  const Eigen::Index x_cols = x.cols();
                     ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
  vi_ = (*this - b).vi_;
               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value<double>::operator-=' requested here
    re_ -= x;
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base<stan::math::var_value<double>>::operator-=<int>' requested here
  y -= rhs;
    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract<std::complex<stan::math::var>, int>' requested here
  return internal::complex_subtract(x, y);
                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-<stan::math::var_value<double>, int>' requested here
  auto y = log(z + sqrt(z * z - 1));
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh<stan::math::var_value<double>>' requested here
  return stan::math::internal::complex_acosh(z);
                               ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+<int, nullptr>' requested here
    grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z);
                                          ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+<double, nullptr>' requested here
    value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x));
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl<stan::math::var_value<double>>' requested here
inline var trigamma(const var& u) { return trigamma_impl(u); }
                                           ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:761:12: note: in instantiation of function template specialization 'stan::model::rvalue<const Eigen::Matrix<double, -1, 1, 0>, nullptr>' requested here
    return rvalue(std::move(v[idxs.head_.n_ - 1]), idxs.tail_, name, depth + 1);
           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:763:12: note: in instantiation of function template specialization 'stan::model::rvalue<const Eigen::Matrix<double, -1, 1, 0> &, nullptr>' requested here
    return rvalue(v[idxs.head_.n_ - 1], idxs.tail_, name, depth + 1);
           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsm.h:5925:58: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, -1, 1, 0> &, nullptr>' requested here
                                        add(stan::model::rvalue(rawindparams, stan::model::cons_list(stan::model::index_multi(indvaryingindex), stan::model::nil_index_list()), "rawindparams"), multiply(rawpopcovchol, get_base1(baseindparams, si, "baseindparams", 1))), 
                                                         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/random_var_context.hpp:77:11: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::write_array<boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    model.write_array(rng, unconstrained_params_, int_params,
          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:93:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
      stan::io::random_var_context random_context(model, rng, init_radius,
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsm.h:6370:66: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, 1, -1, 1> &, nullptr>' requested here
                                                add(stan::model::rvalue(state, stan::model::cons_list(stan::model::index_multi(CINTnonzero), stan::model::nil_index_list()), "state"), transpose(stan::model::rvalue(CINT, stan::model::cons_list(stan::model::index_multi(CINTnonzero), stan::model::cons_list(stan::model::index_uni(1), stan::model::nil_index_list())), "CINT"))), 
                                                                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/random_var_context.hpp:77:11: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::write_array<boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    model.write_array(rng, unconstrained_params_, int_params,
          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:93:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
      stan::io::random_var_context random_context(model, rng, init_radius,
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsm.h:6432:466: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, -1, 1, 0>, nullptr>' requested here
                                        add(stan::model::rvalue(state, stan::model::cons_list(stan::model::index_multi(derrind), stan::model::nil_index_list()), "state"), transpose(multiply(cholesky_decompose(makesym(stan::model::rvalue(discreteDIFFUSION, stan::model::cons_list(stan::model::index_multi(derrind), stan::model::cons_list(stan::model::index_multi(derrind), stan::model::nil_index_list())), "discreteDIFFUSION"), verbose, 1, pstream__)), stan::model::rvalue(stan::model::rvalue(etaupdbasestates, stan::model::cons_list(stan::model::index_min_max((1 + ((rowi - 1) * nlatentpop)), (nlatent + ((rowi - 1) * nlatentpop))), stan::model::nil_index_list()), "etaupdbasestates"), stan::model::cons_list(stan::model::index_multi(derrind), stan::model::nil_index_list()), "etaupdbasestates[(1 + ((rowi - 1) * nlatentpop)):(nlatent + ((rowi - 1) * nlatentpop))]")))), 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/random_var_context.hpp:77:11: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::write_array<boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    model.write_array(rng, unconstrained_params_, int_params,
          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:93:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
      stan::io::random_var_context random_context(model, rng, init_radius,
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
./stanExports_ctsm.h:2189:102: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
            stan::math::assign(firstsub,stan::math::round(((((nsubjects * 1.0) / nsubsets) * (subset - 1)) + 1)));
                                                                                                     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsm_namespace::model_ctsm>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture]
                            [bvi = b.vi_, a](const auto& vi) mutable {
                                          ^
./stanExports_ctsm.h:277:46: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
                        stan::math::sqrt(((1 - sum(square(stan::model::rvalue(o, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_omni(), stan::model::nil_index_list())), "o")))) + 1e-5)), 
                                             ^
./stanExports_ctsm.h:2544:59: note: in instantiation of function template specialization 'model_ctsm_namespace::constraincorsqrt<stan::math::var_value<double>>' requested here
                stan::math::assign(rawpopcorr, tcrossprod(constraincorsqrt(rawpopcovbase, pstream__)));
                                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsm_namespace::model_ctsm>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsm.h:2918:58: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0> &, nullptr>' requested here
                                        add(stan::model::rvalue(rawindparams, stan::model::cons_list(stan::model::index_multi(indvaryingindex), stan::model::nil_index_list()), "rawindparams"), multiply(rawpopcovchol, get_base1(baseindparams, si, "baseindparams", 1))), 
                                                         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsm_namespace::model_ctsm>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsm.h:3363:66: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<stan::math::var_value<double>, 1, -1, 1> &, nullptr>' requested here
                                                add(stan::model::rvalue(state, stan::model::cons_list(stan::model::index_multi(CINTnonzero), stan::model::nil_index_list()), "state"), transpose(stan::model::rvalue(CINT, stan::model::cons_list(stan::model::index_multi(CINTnonzero), stan::model::cons_list(stan::model::index_uni(1), stan::model::nil_index_list())), "CINT"))), 
                                                                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsm_namespace::model_ctsm>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsm.h:3425:466: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, nullptr>' requested here
                                        add(stan::model::rvalue(state, stan::model::cons_list(stan::model::index_multi(derrind), stan::model::nil_index_list()), "state"), transpose(multiply(cholesky_decompose(makesym(stan::model::rvalue(discreteDIFFUSION, stan::model::cons_list(stan::model::index_multi(derrind), stan::model::cons_list(stan::model::index_multi(derrind), stan::model::nil_index_list())), "discreteDIFFUSION"), verbose, 1, pstream__)), stan::model::rvalue(stan::model::rvalue(etaupdbasestates, stan::model::cons_list(stan::model::index_min_max((1 + ((rowi - 1) * nlatentpop)), (nlatent + ((rowi - 1) * nlatentpop))), stan::model::nil_index_list()), "etaupdbasestates"), stan::model::cons_list(stan::model::index_multi(derrind), stan::model::nil_index_list()), "etaupdbasestates[(1 + ((rowi - 1) * nlatentpop)):(nlatent + ((rowi - 1) * nlatentpop))]")))), 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsm_namespace::model_ctsm::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsm_namespace::model_ctsm>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
        container_operands_(index_apply<N_containers>([&, this](auto... Is) {
                                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
    return new precomputed_gradients_vari_template<
               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/multi_normal_cholesky_lpdf.hpp:161:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<double, -1, 1, 0> &, const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0> &, const Eigen::Matrix<stan::math::var_value<double>, -1, -1, 0> &, double, double, stan::math::var_value<double>>::build' requested here
  return ops_partials.build(logp);
                      ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/multi_normal_cholesky_lpdf.hpp:167:10: note: in instantiation of function template specialization 'stan::math::multi_normal_cholesky_lpdf<false, Eigen::Matrix<double, -1, 1, 0>, Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, Eigen::Matrix<stan::math::var_value<double>, -1, -1, 0>>' requested here
  return multi_normal_cholesky_lpdf<false>(y, mu, L);
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/multi_normal_cholesky_log.hpp:41:10: note: in instantiation of function template specialization 'stan::math::multi_normal_cholesky_lpdf<Eigen::Matrix<double, -1, 1, 0>, Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, Eigen::Matrix<stan::math::var_value<double>, -1, -1, 0>>' requested here
  return multi_normal_cholesky_lpdf<T_y, T_loc, T_covar>(y, mu, L);
         ^
./stanExports_ctsm.h:3782:165: note: in instantiation of function template specialization 'stan::math::multi_normal_cholesky_log<Eigen::Matrix<double, -1, 1, 0>, Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, Eigen::Matrix<stan::math::var_value<double>, -1, -1, 0>>' requested here
                                        (stan::model::rvalue(llrow, stan::model::cons_list(stan::model::index_uni(rowi), stan::model::nil_index_list()), "llrow") + multi_normal_cholesky_log(stan::model::rvalue(Y, stan::model::cons_list(stan::model::index_uni(rowi), stan::model::cons_list(stan::model::index_multi(o0d), stan::model::nil_index_list())), "Y"), stan::model::rvalue(syprior, stan::model::cons_list(stan::model::index_multi(o0d), stan::model::nil_index_list()), "syprior"), stan::model::rvalue(ypriorcov_sqrt, stan::model::cons_list(stan::model::index_multi(o0d), stan::model::cons_list(stan::model::index_multi(o0d), stan::model::nil_index_list())), "ypriorcov_sqrt"))), 
                                                                                                                                                                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all)
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsm_namespace::model_ctsm>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsm_namespace::model_ctsm>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsm.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsm_namespace::model_ctsm, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
        container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
                                                           ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
static void set_zero_all_adjoints() {
            ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
  using value_t = value_type_t<EigMat>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
  using idx_t = index_type_t<std::vector<T>>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef]
    using Block_ = Eigen::Block<Eigen::MatrixXd>;
          ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef]
  using T_scalar = value_type_t<T>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
  using value_t = value_type_t<VarMat>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef]
  using T_y_val =
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef]
  using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
  using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, -1, 1>;
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
  using T_alpha_val = typename std::conditional_t<
        ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef]
  using pair_type = std::pair<int, arena_vec>;
        ^
In file included from stanExports_ctsm.cc:5:
./stanExports_ctsm.h:1915:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
        typedef double local_scalar_t__;
                       ^
74 warnings generated.


clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0   -fpic  -g -O3 -Wall -pedantic -c stanExports_ctsmgen.cc -o stanExports_ctsmgen.o
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/CholmodSupport:45:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:6:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable]
  bool error = false;
       ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:54:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/profiling.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable]
  int n_transitions = log_omegas.cols() - 1;
      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable]
  double neg_root_5 = -root_5;
         ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable]
  const int N = stan::math::size(theta);
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable]
  size_t N = max_size(y, mu, sigma);
         ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable]
  int n = G.rows();  // number of states
      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable]
  const int n_states = omegas.rows();
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable]
  static const char* function = "std_normal_rng";
                     ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable]
  double ck = 50;
         ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
    int ret = stan::services::error_codes::CONFIG;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable]
  const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols());
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable]
  const Eigen::Index x_cols = x.cols();
                     ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
  vi_ = (*this - b).vi_;
               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value<double>::operator-=' requested here
    re_ -= x;
        ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base<stan::math::var_value<double>>::operator-=<int>' requested here
  y -= rhs;
    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract<std::complex<stan::math::var>, int>' requested here
  return internal::complex_subtract(x, y);
                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-<stan::math::var_value<double>, int>' requested here
  auto y = log(z + sqrt(z * z - 1));
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh<stan::math::var_value<double>>' requested here
  return stan::math::internal::complex_acosh(z);
                               ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+<int, nullptr>' requested here
    grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z);
                                          ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+<double, nullptr>' requested here
    value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x));
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl<stan::math::var_value<double>>' requested here
inline var trigamma(const var& u) { return trigamma_impl(u); }
                                           ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:761:12: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, -1, 1, 0>, nullptr>' requested here
    return rvalue(std::move(v[idxs.head_.n_ - 1]), idxs.tail_, name, depth + 1);
           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:763:12: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, -1, 1, 0> &, nullptr>' requested here
    return rvalue(v[idxs.head_.n_ - 1], idxs.tail_, name, depth + 1);
           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable]
  const auto v_size = v.size();
             ^
./stanExports_ctsmgen.h:4319:66: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, 1, -1, 1> &, nullptr>' requested here
                                                add(stan::model::rvalue(state, stan::model::cons_list(stan::model::index_multi(CINTnonzero), stan::model::nil_index_list()), "state"), transpose(stan::model::rvalue(CINT, stan::model::cons_list(stan::model::index_multi(CINTnonzero), stan::model::cons_list(stan::model::index_uni(1), stan::model::nil_index_list())), "CINT"))), 
                                                                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/random_var_context.hpp:77:11: note: in instantiation of function template specialization 'model_ctsmgen_namespace::model_ctsmgen::write_array<boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    model.write_array(rng, unconstrained_params_, int_params,
          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:93:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
      stan::io::random_var_context random_context(model, rng, init_radius,
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsmgen_namespace::model_ctsmgen>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsmgen.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
                            [avi = a.vi_, b](const auto& vi) mutable {
                                          ^
./stanExports_ctsmgen.h:2197:102: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
            stan::math::assign(firstsub,stan::math::round(((((nsubjects * 1.0) / nsubsets) * (subset - 1)) + 1)));
                                                                                                     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsmgen_namespace::model_ctsmgen::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsmgen_namespace::model_ctsmgen>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsmgen_namespace::model_ctsmgen>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsmgen.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture]
                            [bvi = b.vi_, a](const auto& vi) mutable {
                                          ^
./stanExports_ctsmgen.h:277:46: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
                        stan::math::sqrt(((1 - sum(square(stan::model::rvalue(o, stan::model::cons_list(stan::model::index_uni(i), stan::model::cons_list(stan::model::index_omni(), stan::model::nil_index_list())), "o")))) + 1e-5)), 
                                             ^
./stanExports_ctsmgen.h:2309:59: note: in instantiation of function template specialization 'model_ctsmgen_namespace::constraincorsqrt<stan::math::var_value<double>>' requested here
                stan::math::assign(rawpopcorr, tcrossprod(constraincorsqrt(rawpopcovbase, pstream__)));
                                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_ctsmgen_namespace::model_ctsmgen::log_prob<true, true, stan::math::var_value<double>>' requested here
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsmgen_namespace::model_ctsmgen>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsmgen_namespace::model_ctsmgen>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsmgen.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
        container_operands_(index_apply<N_containers>([&, this](auto... Is) {
                                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
    return new precomputed_gradients_vari_template<
               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/multi_normal_cholesky_lpdf.hpp:161:23: note: in instantiation of member function 'stan::math::operands_and_partials<const std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>> &, const Eigen::Matrix<double, -1, 1, 0> &, const Eigen::Matrix<double, -1, -1, 0> &, double, double, stan::math::var_value<double>>::build' requested here
  return ops_partials.build(logp);
                      ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/multi_normal_cholesky_lpdf.hpp:167:10: note: in instantiation of function template specialization 'stan::math::multi_normal_cholesky_lpdf<false, std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>, Eigen::Matrix<double, -1, 1, 0>, Eigen::Matrix<double, -1, -1, 0>>' requested here
  return multi_normal_cholesky_lpdf<false>(y, mu, L);
         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/multi_normal_cholesky_log.hpp:41:10: note: in instantiation of function template specialization 'stan::math::multi_normal_cholesky_lpdf<std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>, Eigen::Matrix<double, -1, 1, 0>, Eigen::Matrix<double, -1, -1, 0>>' requested here
  return multi_normal_cholesky_lpdf<T_y, T_loc, T_covar>(y, mu, L);
         ^
./stanExports_ctsmgen.h:2429:32: note: in instantiation of function template specialization 'stan::math::multi_normal_cholesky_log<std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>, Eigen::Matrix<double, -1, 1, 0>, Eigen::Matrix<double, -1, -1, 0>>' requested here
                lp_accum__.add(multi_normal_cholesky_log(baseindparams, rep_vector(0, nindvarying), stan::model::rvalue(IIlatentpop, stan::model::cons_list(stan::model::index_min_max(1, nindvarying), stan::model::cons_list(stan::model::index_min_max(1, nindvarying), stan::model::nil_index_list())), "IIlatentpop")));
                               ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all)
    var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
                                   ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_ctsmgen_namespace::model_ctsmgen>' requested here
      log_prob = stan::model::log_prob_grad<true, Jacobian>(
                              ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
  std::vector<double> cont_vector = util::initialize(
                                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_ctsmgen_namespace::model_ctsmgen>' requested here
    return_code = stan::services::diagnose::diagnose(model,
                                            ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
    ret = command(args, model_, holder, names_oi_tidx_,
          ^
stanExports_ctsmgen.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_ctsmgen_namespace::model_ctsmgen, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
                                                                                      ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
        container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
                                                           ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
static void set_zero_all_adjoints() {
            ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
  using value_t = value_type_t<EigMat>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
  using idx_t = index_type_t<std::vector<T>>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef]
    using Block_ = Eigen::Block<Eigen::MatrixXd>;
          ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef]
  using T_scalar = value_type_t<T>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
  using value_t = value_type_t<VarMat>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef]
  using T_y_val =
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef]
  using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
  using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
  using T_partials_array = Eigen::Array<T_partials_return, -1, 1>;
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
  using T_alpha_val = typename std::conditional_t<
        ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef]
  using pair_type = std::pair<int, arena_vec>;
        ^
In file included from stanExports_ctsmgen.cc:5:
./stanExports_ctsmgen.h:1947:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
        typedef double local_scalar_t__;
                       ^
69 warnings generated.
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ctsem.so RcppExports.o stanExports_cov.o stanExports_ctsm.o stanExports_ctsmgen.o -L/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/ctsem.Rcheck/00LOCK-ctsem/00new/ctsem/libs
** R
** data
*** moving datasets to lazyload DB
DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

** inst
** byte-compile and prepare package for lazy loading
DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
 Positive values rounded down, negative values rounded up or down in platform-dependent way.

** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ctsem)