* installing *source* package ‘ctsem’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.5 (2)’
using C++17


clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:11:9: note: previous definition is here
   11 | #define R_NO_REMAP 1
      |         ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
6 warnings generated.


clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c stanExports_cov.cc -o stanExports_cov.o
In file included from stanExports_cov.cc:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:11:9: note: previous definition is here
   11 | #define R_NO_REMAP 1
      |         ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_cov.cc:5:
./stanExports_cov.h:623:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  623 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_cov.h:772:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  772 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_cov.cc:5:
In file included from ./stanExports_cov.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
21 warnings generated.


clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c stanExports_ctsm.cc -o stanExports_ctsm.o
In file included from stanExports_ctsm.cc:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:11:9: note: previous definition is here
   11 | #define R_NO_REMAP 1
      |         ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_ctsm.cc:5:
./stanExports_ctsm.h:5239:13: warning: variable 'thresholdstart' set but not used [-Wunused-but-set-variable]
 5239 |         int thresholdstart = std::numeric_limits<int>::min();
      |             ^
./stanExports_ctsm.h:9368:13: warning: variable 'thresholdstart' set but not used [-Wunused-but-set-variable]
 9368 |         int thresholdstart = std::numeric_limits<int>::min();
      |             ^
./stanExports_ctsm.h:9437:16: warning: variable 'prevtime' set but not used [-Wunused-but-set-variable]
 9437 |         double prevtime = std::numeric_limits<double>::quiet_NaN();
      |                ^
./stanExports_ctsm.h:8981:20: warning: unused variable 'jacobian__' [-Wunused-variable]
 8981 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_ctsm.h:13425:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
 13425 |       int pos__ = std::numeric_limits<int>::min();
       |           ^
In file included from stanExports_ctsm.cc:5:
In file included from ./stanExports_ctsm.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
24 warnings generated.


clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c stanExports_ctsmgen.cc -o stanExports_ctsmgen.o
In file included from stanExports_ctsmgen.cc:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:11:9: note: previous definition is here
   11 | #define R_NO_REMAP 1
      |         ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_ctsmgen.cc:5:
./stanExports_ctsmgen.h:5057:13: warning: variable 'thresholdstart' set but not used [-Wunused-but-set-variable]
 5057 |         int thresholdstart = std::numeric_limits<int>::min();
      |             ^
./stanExports_ctsmgen.h:5504:13: warning: variable 'thresholdstart' set but not used [-Wunused-but-set-variable]
 5504 |         int thresholdstart = std::numeric_limits<int>::min();
      |             ^
./stanExports_ctsmgen.h:6060:18: warning: variable 'prevtime' set but not used [-Wunused-but-set-variable]
 6060 |           double prevtime = std::numeric_limits<double>::quiet_NaN();
      |                  ^
./stanExports_ctsmgen.h:5270:20: warning: unused variable 'jacobian__' [-Wunused-variable]
 5270 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_ctsmgen.h:9498:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
 9498 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_ctsmgen.cc:5:
In file included from ./stanExports_ctsmgen.h:23:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
24 warnings generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o ctsem.so RcppExports.o stanExports_cov.o stanExports_ctsm.o stanExports_ctsmgen.o -L/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R-d-clang-18/lib -lR
installing to /srv/hornik/tmp/CRAN/ctsem.Rcheck/00LOCK-ctsem/00new/ctsem/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ctsem)