R Under development (unstable) (2026-03-16 r89642 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ctlr) > > test_check("ctlr") Use of Clinical Tolerance Limits (CTL) for assessing agreement ************************************************************** ID Variable: id New Method Y Variable: y1 Reference Method Y Variable: y2 Running... seed set to 123456789 Constant tolerance limits specified: intercept= 5& slope= 0 Estimating BLUP for latent trait... diff_bias=3.34827252747801, 95%CI=[1.60863961315311;5.0879054418029] prop_bias=0.833226011639255, 95%CI=[0.787687600410943;0.878764422867566] Use of Clinical Tolerance Limits (CTL) for assessing agreement ************************************************************** ID Variable: id New Method Y Variable: y1 Reference Method Y Variable: y2 Running... seed set to 123456789 Constant tolerance limits specified: intercept= 5& slope= 0 Estimating BLUP for latent trait... diff_bias=3.34827252747801, 95%CI=[1.60863961315311;5.0879054418029] prop_bias=0.833226011639255, 95%CI=[0.787687600410943;0.878764422867566] Use of Clinical Tolerance Limits (CTL) for assessing agreement ************************************************************** ID Variable: id New Method Y Variable: y1 Reference Method Y Variable: y2 Running... seed set to 123456789 Non-constant tolerance limits specified: intercept= 0& slope= 0.15 Estimating BLUP for latent trait... diff_bias=3.34827252747801, 95%CI=[1.60863961315311;5.0879054418029] prop_bias=0.833226011639255, 95%CI=[0.787687600410943;0.878764422867566] Number of simulations used for CPA plot is set to 100 Generating Conditional probability of agreement plot ************************************************************** Saving 7 x 7 in image Conditional probability of agreement plot exported to D:\temp\2026_03_17_08_20_17_26941\Rtmpczwl6N\filed7905b6467cc\ctl_outputs\cpa_plot.pdf Use of Clinical Tolerance Limits (CTL) for assessing agreement ************************************************************** ID Variable: id New Method Y Variable: y1 Reference Method Y Variable: y2 Running... seed set to 123456789 Constant tolerance limits specified: intercept= 5& slope= 0 Estimating BLUP for latent trait... diff_bias=3.34827252747801, 95%CI=[1.60863961315311;5.0879054418029] prop_bias=0.833226011639255, 95%CI=[0.787687600410943;0.878764422867566] Generating Tolerance Limits Plot ************************************************************** Saving 7 x 7 in image Tolerance limits plot exported to ./ctl_outputs/tl_plot.pdf Use of Clinical Tolerance Limits (CTL) for assessing agreement ************************************************************** ID Variable: id New Method Y Variable: y1 Reference Method Y Variable: y2 Running... seed set to 123456789 Constant tolerance limits specified: intercept= 5& slope= 0 Estimating BLUP for latent trait... diff_bias=3.34827252747801, 95%CI=[1.60863961315311;5.0879054418029] prop_bias=0.833226011639255, 95%CI=[0.787687600410943;0.878764422867566] Results saved to D:\temp\2026_03_17_08_20_17_26941\Rtmpczwl6N\filed790356453c4\ctl_outputs\ctl_results.rda Use of Clinical Tolerance Limits (CTL) for assessing agreement ************************************************************** ID Variable: id New Method Y Variable: y1 Reference Method Y Variable: y2 Running... seed set to 123456789 Non-constant tolerance limits specified: intercept= 1& slope= 0.2 Estimating BLUP for latent trait... diff_bias=5.14230158133301, 95%CI=[2.59934718823013;7.68525597443589] prop_bias=0.79538824468499, 95%CI=[0.734754456891755;0.856022032478225] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ] > > proc.time() user system elapsed 7.17 0.71 7.90