* using log directory 'd:/RCompile/CRANincoming/R-devel/csmpv.Rcheck'
* using R Under development (unstable) (2025-12-09 r89129 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'csmpv/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'csmpv' version '1.0.5'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [24s] NOTE
Maintainer: 'Aixiang Jiang <aijiang@bccrc.ca>'

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aixiang",
                    family = "Jiang",
                    role = c("aut", "cre", "cph"),
                    email = "aijiang@bccrc.ca",
                    comment = c(ORCID = "0000-0002-6153-7595"))
as necessary.

The Description field contains
  <arXiv:1603.02754>, - Aoki et al. (2023) <doi:10.1200/JCO.23.01115>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
* checking package namespace information ... OK
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* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'csmpv' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
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* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
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* checking R code for possible problems ... [16s] OK
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* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [19s] ERROR
Running examples in 'csmpv-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: validation
> ### Title: Validate Model Predictions
> ### Aliases: validation
> 
> ### ** Examples
> 
> # Load in data sets:
> data("datlist", package = "csmpv")
> tdat = datlist$training
> vdat = datlist$validation
> 
> # The function saves files locally. You can define your own temporary directory. 
> # If not, tempdir() can be used to get the system's temporary directory.
> temp_dir = tempdir()
> # As an example, let's define Xvars, which will be used later:
> Xvars = c("highIPI", "B.Symptoms", "MYC.IHC", "BCL2.IHC", "CD10.IHC", "BCL6.IHC")
> 
> # The function can work with multiple models and multiple outcome types. 
> # Here, we use XGBoost model with binary outcome as an example:
> bxfit = XGBtraining(data = tdat, biomks = Xvars, Y = "DZsig",
+                     outfile = paste0(temp_dir, "/binary_XGBoost"))
> testdat = vdat[,bxfit$XGBoost_model$feature_names]
> test = xgboost::xgb.DMatrix(as.matrix(testdat))
Error in xgboost::xgb.DMatrix(as.matrix(testdat)) : 
  [04:12:49] src/data/../collective/../data/array_interface.h:422: Check failed: ptr % alignment == 0 (1 vs. 0) : Input pointer misalignment.
Execution halted
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* checking PDF version of manual ... [11s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE