* using log directory ‘/srv/hornik/tmp/CRAN/crt2power.Rcheck’
* using R Under development (unstable) (2024-06-12 r86726)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘crt2power/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘crt2power’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Melody Owen <melody.owen@yale.edu>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crt2power’ can be installed ... [7s/7s] WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘MASS::select’ by ‘dplyr::select’ when loading ‘crt2power’
  Warning: replacing previous import ‘dplyr::group_rows’ by ‘kableExtra::group_rows’ when loading ‘crt2power’
  Warning: replacing previous import ‘pracma::gradient’ by ‘rootSolve::gradient’ when loading ‘crt2power’
  Warning: replacing previous import ‘pracma::hessian’ by ‘rootSolve::hessian’ when loading ‘crt2power’
See ‘/srv/hornik/tmp/CRAN/crt2power.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Dependence on R version ‘4.3.1’ not with patchlevel 0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] NOTE
calc_K_disj_2dftest: no visible global function definition for ‘qchisq’
calc_K_disj_2dftest: no visible global function definition for ‘pchisq’
calc_K_disj_2dftest: no visible global function definition for ‘qf’
calc_K_disj_2dftest: no visible global function definition for ‘pf’
calc_ncp_chi2: no visible global function definition for ‘qchisq’
calc_ncp_chi2: no visible global function definition for ‘pchisq’
calc_ncp_chi2: no visible global function definition for ‘uniroot’
calc_ncp_chi2 : <anonymous>: no visible global function definition for
  ‘pchisq’
calc_pwr_comb_outcome: no visible global function definition for
  ‘qchisq’
calc_pwr_comb_outcome: no visible global function definition for
  ‘pchisq’
calc_pwr_conj_test: no visible global function definition for ‘qt’
calc_pwr_conj_test: no visible global function definition for ‘qnorm’
calc_pwr_disj_2dftest: no visible global function definition for
  ‘qchisq’
calc_pwr_disj_2dftest: no visible global function definition for
  ‘pchisq’
calc_pwr_disj_2dftest: no visible global function definition for ‘qf’
calc_pwr_disj_2dftest: no visible global function definition for ‘pf’
calc_pwr_pval_adj: no visible global function definition for ‘qchisq’
calc_pwr_pval_adj: no visible global function definition for ‘pchisq’
calc_pwr_single_1dftest: no visible global function definition for
  ‘qchisq’
calc_pwr_single_1dftest: no visible global function definition for
  ‘pchisq’
Undefined global functions or variables:
  pchisq pf qchisq qf qnorm qt uniroot
Consider adding
  importFrom("stats", "pchisq", "pf", "qchisq", "qf", "qnorm", "qt",
             "uniroot")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'calc_K_comb_outcome.Rd':
  \examples lines wider than 100 characters:
     calc_K_comb_outcome(power = 0.8, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0. ... [TRUNCATED]

Rd file 'calc_K_conj_test.Rd':
  \examples lines wider than 100 characters:
     calc_K_conj_test(power = 0.8, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025 ... [TRUNCATED]

Rd file 'calc_K_disj_2dftest.Rd':
  \examples lines wider than 100 characters:
     calc_K_disj_2dftest(power = 0.8, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0. ... [TRUNCATED]

Rd file 'calc_K_pval_adj.Rd':
  \examples lines wider than 100 characters:
     calc_K_pval_adj(power = 0.8, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025, ... [TRUNCATED]

Rd file 'calc_K_single_1dftest.Rd':
  \examples lines wider than 100 characters:
     calc_K_single_1dftest(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025 ... [TRUNCATED]

Rd file 'calc_m_comb_outcome.Rd':
  \examples lines wider than 100 characters:
     calc_m_comb_outcome(power = 0.8, K = 15, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.0 ... [TRUNCATED]

Rd file 'calc_m_conj_test.Rd':
  \examples lines wider than 100 characters:
     calc_m_conj_test(power = 0.8, K = 15, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025, ... [TRUNCATED]

Rd file 'calc_m_disj_2dftest.Rd':
  \examples lines wider than 100 characters:
     calc_m_disj_2dftest(power = 0.8, K = 15, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.0 ... [TRUNCATED]

Rd file 'calc_m_pval_adj.Rd':
  \examples lines wider than 100 characters:
     calc_m_pval_adj(power = 0.8, K = 15, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025,  ... [TRUNCATED]

Rd file 'calc_m_single_1dftest.Rd':
  \examples lines wider than 100 characters:
     calc_m_single_1dftest(power = 0.8, K = 15, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0 ... [TRUNCATED]

Rd file 'calc_pwr_comb_outcome.Rd':
  \examples lines wider than 100 characters:
     calc_pwr_comb_outcome(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025 ... [TRUNCATED]

Rd file 'calc_pwr_conj_test.Rd':
  \examples lines wider than 100 characters:
     calc_pwr_conj_test(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025, r ... [TRUNCATED]

Rd file 'calc_pwr_disj_2dftest.Rd':
  \examples lines wider than 100 characters:
     calc_pwr_disj_2dftest(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025 ... [TRUNCATED]

Rd file 'calc_pwr_pval_adj.Rd':
  \examples lines wider than 100 characters:
     calc_pwr_pval_adj(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025, rh ... [TRUNCATED]

Rd file 'calc_pwr_single_1dftest.Rd':
  \examples lines wider than 100 characters:
     calc_pwr_single_1dftest(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.0 ... [TRUNCATED]

Rd file 'run_crt2_design.Rd':
  \examples lines wider than 100 characters:
     run_crt2_design(output = "power", K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, r ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [3s/3s] ERROR
Running examples in ‘crt2power-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calc_K_single_1dftest
> ### Title: Calculate required number of clusters per treatment group for a
> ###   cluster-randomized trial with co-primary endpoints using the single
> ###   1-DF combined test approach.
> ### Aliases: calc_K_single_1dftest
> 
> ### ** Examples
> 
> calc_K_single_1dftest(K = 15, m = 300, alpha = 0.05, beta1 = 0.1, beta2 = 0.1, varY1 = 0.23, varY2 = 0.25, rho01 = 0.025, rho02 = 0.025, rho1 = 0.01, rho2  = 0.05)
Error in calc_K_single_1dftest(K = 15, m = 300, alpha = 0.05, beta1 = 0.1,  : 
  unused argument (K = 15)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/5s] OK
  Running ‘testthat.R’ [4s/5s]
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 4 NOTEs