* using log directory ‘/srv/hornik/tmp/CRAN_pretest/crmPack.Rcheck’
* using R Under development (unstable) (2025-11-26 r89066)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.5 (1)
    Debian flang version 21.1.5 (1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘crmPack/DESCRIPTION’ ... OK
* this is package ‘crmPack’ version ‘2.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [7s/14s] NOTE
Maintainer: ‘Daniel Sabanes Bove <daniel.sabanes_bove@rconis.com>’

Possibly misspelled words in DESCRIPTION:
  Bove (38:13)
  Sabanes (38:5)
  al (38:21)
  et (38:18)

Found the following (possibly) invalid URLs:
  URL: https://openpharma.github.io/crmPack/main/articles/migration_from_the_old_crmPack.html
    From: README.md
    Status: 404
    Message: Not Found
  URL: https://www.berryconsultants.com/software/ (moved to https://www.berryconsultants.com/software)
    From: inst/doc/crmPack-jss-paper.html
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.rebuild_vignettes.R
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  vignettes/.rebuild_vignettes.R
* checking for portable file names ... WARNING
Found the following file with a non-portable file name:
  vignettes/example-figures/plot-samplesdata1 -1.png
These are not fully portable file names.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crmPack’ can be installed ... [16s/16s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/19s] OK
* checking Rd files ... [3s/3s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [77s/77s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [227s/227s] ERROR
  Running ‘test-package-load.R’ [1s/1s]
  Running ‘testthat.R’ [225s/225s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > pkg_name <- "crmPack"
  > library(pkg_name, character.only = TRUE)
  Loading required package: ggplot2
  Registered S3 method overwritten by 'crmPack':
    method       from  
    print.gtable gtable
  Type crmPackHelp() to open help browser
  Type crmPackExample() to open example
  
  > testthat::test_check(pkg_name)
  Emini is: 0.183490121
  xmini are:
  -0.422297252 0.02623766389 1 1 0 
  Totally it used 2.6e-05 secs
  No. of function call is: 1
  Algorithm reached max number of iterations.
  Emini is: 0.4200682601
  xmini are:
  -0.08788322383 1.118774573 0.7705694558 0.586101325 0.04735816722 
  Totally it used 2.3e-05 secs
  No. of function call is: 1
  Algorithm reached max number of iterations.
  Emini is: 0.902298701
  xmini are:
  -0.5273930997 1.089288851 1 1 0 
  Totally it used 2.8e-05 secs
  No. of function call is: 1
  Algorithm reached max number of iterations.
  Emini is: 0.902298701
  xmini are:
  -0.5273930997 1.089288851 1 1 0 
  Totally it used 2.1e-05 secs
  No. of function call is: 1
  Algorithm reached max number of iterations.
  NULL
  Saving _problems/test-helpers_knitr_NextBest-404.R
  [ FAIL 1 | WARN 0 | SKIP 232 | PASS 6797 ]
  
  ══ Skipped tests (232) ═════════════════════════════════════════════════════════
  • On CRAN (232): 'test-Data-methods.R:3:1', 'test-Data-methods.R:10:1',
    'test-Data-methods.R:17:1', 'test-Data-methods.R:29:1',
    'test-Data-methods.R:36:1', 'test-Data-methods.R:48:1',
    'test-Data-methods.R:55:1', 'test-Data-methods.R:67:1',
    'test-Data-methods.R:74:1', 'test-Data-methods.R:81:1',
    'test-Design-methods.R:9:1', 'test-Design-methods.R:27:1',
    'test-Design-methods.R:170:1', 'test-Design-methods.R:211:1',
    'test-Design-methods.R:258:1', 'test-Design-methods.R:347:1',
    'test-Design-methods.R:372:1', 'test-Design-methods.R:499:1',
    'test-Design-methods.R:626:1', 'test-Design-methods.R:677:1',
    'test-Design-methods.R:724:1', 'test-Design-methods.R:777:1',
    'test-Design-methods.R:795:1', 'test-Design-methods.R:816:1',
    'test-Design-methods.R:843:1', 'test-Design-methods.R:872:1',
    'test-Design-methods.R:945:1', 'test-Design-methods.R:1018:1',
    'test-Design-methods.R:1647:1', 'test-Design-methods.R:1672:1',
    'test-Design-methods.R:1793:1', 'test-Design-methods.R:1802:1',
    'test-Design-methods.R:1813:1', 'test-Design-methods.R:1827:1',
    'test-Model-class.R:81:1', 'test-Model-class.R:90:1',
    'test-Model-class.R:127:1', 'test-Model-class.R:136:1',
    'test-Model-class.R:173:1', 'test-Model-class.R:182:1',
    'test-Model-class.R:219:1', 'test-Model-class.R:228:1',
    'test-Model-class.R:264:1', 'test-Model-class.R:273:1',
    'test-Model-class.R:306:1', 'test-Model-class.R:315:1',
    'test-Model-class.R:348:1', 'test-Model-class.R:357:1',
    'test-Model-class.R:402:1', 'test-Model-class.R:411:1',
    'test-Model-class.R:456:1', 'test-Model-class.R:465:1',
    'test-Model-class.R:520:1', 'test-Model-class.R:536:1',
    'test-Model-class.R:583:1', 'test-Model-class.R:592:1',
    'test-Model-class.R:645:1', 'test-Model-class.R:661:1',
    'test-Model-class.R:677:1', 'test-Model-class.R:693:1',
    'test-Model-class.R:713:1', 'test-Model-class.R:729:1',
    'test-Model-class.R:745:1', 'test-Model-class.R:761:1',
    'test-Model-class.R:852:1', 'test-Model-class.R:868:1',
    'test-Model-class.R:907:1', 'test-Model-class.R:923:1',
    'test-Model-class.R:971:1', 'test-Model-class.R:987:1',
    'test-Model-class.R:1003:1', 'test-Model-class.R:1019:1',
    'test-Model-class.R:1062:1', 'test-Model-class.R:1071:1',
    'test-Model-class.R:1096:1', 'test-Model-class.R:1105:1',
    'test-Model-class.R:1140:1', 'test-Model-class.R:1148:1',
    'test-Model-class.R:1156:1', 'test-Model-class.R:1164:1',
    'test-Model-class.R:1217:1', 'test-Model-class.R:1226:1',
    'test-Model-class.R:1263:1', 'test-Model-class.R:1272:1',
    'test-Model-class.R:1281:1', 'test-Model-class.R:1290:1',
    'test-Model-class.R:1299:1', 'test-Model-class.R:1308:1',
    'test-Model-class.R:1404:1', 'test-Model-class.R:1413:1',
    'test-Model-class.R:1528:1', 'test-Model-class.R:1537:1',
    'test-Model-class.R:1593:1', 'test-Model-class.R:1602:1',
    'test-Model-methods.R:2493:1', 'test-Model-methods.R:2501:1',
    'test-Model-validity.R:126:1', 'test-Model-validity.R:223:1',
    'test-Model-validity.R:314:1', 'test-Model-validity.R:425:1',
    'test-Model-validity.R:433:1', 'test-Model-validity.R:442:1',
    'test-Model-validity.R:463:1', 'test-Model-validity.R:473:1',
    'test-Model-validity.R:493:1', 'test-Model-validity.R:507:1',
    'test-Model-validity.R:840:1', 'test-Model-validity.R:858:1',
    'test-Rules-methods.R:5:1', 'test-Rules-methods.R:58:1',
    'test-Rules-methods.R:85:1', 'test-Rules-methods.R:106:1',
    'test-Rules-methods.R:136:1', 'test-Rules-methods.R:156:1',
    'test-Rules-methods.R:200:1', 'test-Rules-methods.R:218:1',
    'test-Rules-methods.R:273:1', 'test-Rules-methods.R:304:1',
    'test-Rules-methods.R:327:1', 'test-Rules-methods.R:419:1',
    'test-Rules-methods.R:443:1', 'test-Rules-methods.R:459:1',
    'test-Rules-methods.R:476:1', 'test-Rules-methods.R:495:1',
    'test-Rules-methods.R:509:1', 'test-Rules-methods.R:526:1',
    'test-Rules-methods.R:578:1', 'test-Rules-methods.R:617:1',
    'test-Rules-methods.R:694:1', 'test-Rules-methods.R:714:1',
    'test-Rules-methods.R:755:1', 'test-Rules-methods.R:787:1',
    'test-Rules-methods.R:852:1', 'test-Rules-methods.R:896:1',
    'test-Rules-methods.R:991:1', 'test-Rules-methods.R:1008:1',
    'test-Rules-methods.R:1026:1', 'test-Rules-methods.R:1045:1',
    'test-Rules-methods.R:1062:1', 'test-Rules-methods.R:1082:1',
    'test-Rules-methods.R:1120:1', 'test-Rules-methods.R:4971:1',
    'test-Rules-methods.R:4977:1', 'test-Rules-methods.R:4983:1',
    'test-Rules-methods.R:4989:1', 'test-Rules-methods.R:4995:1',
    'test-Rules-methods.R:5001:1', 'test-Rules-methods.R:5008:1',
    'test-Rules-methods.R:5014:1', 'test-Rules-methods.R:5020:1',
    'test-Rules-methods.R:5040:1', 'test-Samples-methods.R:271:1',
    'test-Samples-methods.R:475:1', 'test-Samples-methods.R:582:1',
    'test-Samples-methods.R:665:1', 'test-Samples-methods.R:764:1',
    'test-Samples-methods.R:788:1', 'test-Samples-methods.R:822:1',
    'test-Samples-methods.R:900:1', 'test-Samples-methods.R:985:1',
    'test-Samples-methods.R:1119:1', 'test-Samples-methods.R:1276:1',
    'test-Samples-methods.R:1308:1', 'test-Samples-methods.R:1359:1',
    'test-Samples-methods.R:1424:1', 'test-Samples-methods.R:1481:1',
    'test-Samples-methods.R:1507:1', 'test-Samples-methods.R:1565:1',
    'test-Samples-methods.R:1668:1', 'test-Samples-methods.R:1755:1',
    'test-Samples-methods.R:1851:1', 'test-Samples-methods.R:1951:1',
    'test-Samples-methods.R:2101:1', 'test-Samples-methods.R:2153:1',
    'test-Samples-methods.R:2180:1', 'test-Simulations-methods.R:41:1',
    'test-Simulations-methods.R:82:1', 'test-Simulations-methods.R:178:1',
    'test-Simulations-methods.R:211:1', 'test-Simulations-methods.R:438:1',
    'test-Simulations-methods.R:495:1', 'test-Simulations-methods.R:551:1',
    'test-Simulations-methods.R:584:1', 'test-Simulations-methods.R:653:1',
    'test-Simulations-methods.R:710:1', 'test-Simulations-methods.R:751:1',
    'test-Simulations-methods.R:798:1', 'test-Simulations-methods.R:822:1',
    'test-Simulations-methods.R:851:1', 'test-Simulations-methods.R:938:1',
    'test-Simulations-methods.R:998:1', 'test-Simulations-methods.R:1039:1',
    'test-Simulations-methods.R:1066:1', 'test-Simulations-methods.R:1090:1',
    'test-Simulations-methods.R:1119:1', 'test-Simulations-methods.R:1142:1',
    'test-Simulations-methods.R:1164:1', 'test-Simulations-methods.R:1204:1',
    'test-fromQuantiles.R:128:3', 'test-fromQuantiles.R:174:3',
    'test-fromQuantiles.R:199:3', 'test-fromQuantiles.R:219:3',
    'test-helpers-simulations.R:1:1', 'test-helpers.R:69:1',
    'test-helpers.R:81:1', 'test-helpers.R:96:1', 'test-helpers.R:835:1',
    'test-helpers.R:843:1', 'test-helpers_jags.R:236:1',
    'test-helpers_jags.R:247:1', 'test-helpers_knitr.R:111:1',
    'test-helpers_knitr.R:299:1', 'test-helpers_knitr.R:360:1',
    'test-helpers_rules.R:250:1', 'test-helpers_rules.R:297:1',
    'test-helpers_rules.R:359:1', 'test-helpers_rules.R:402:1',
    'test-helpers_rules.R:418:1', 'test-helpers_rules.R:436:1',
    'test-helpers_rules.R:456:1', 'test-helpers_rules.R:478:1',
    'test-helpers_rules.R:499:1', 'test-helpers_rules.R:522:1',
    'test-helpers_rules.R:537:1', 'test-sas-results-part-1.R:4:3',
    'test-sas-results-part-1.R:100:3', 'test-sas-results-part-1.R:196:3',
    'test-sas-results-part-1.R:302:3', 'test-sas-results-part-2.R:4:3',
    'test-sas-results-part-2.R:127:3', 'test-sas-results-part-2.R:250:3',
    'test-sas-results-part-2.R:373:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-helpers_knitr_NextBest.R:359:3'): knit_print.NextBestNCRMLoss works correctly ──
  Expected `knit_print(...)` to equal `paste0(...)`.
  Differences:
  lines(actual)[7:13] vs lines(expected)[7:13]
    ""
    "DLT ranges and loss coefficients are given in the following table:"
    ""
  - "<table class=\" lightable-minimal\" style=\"font-family: &quot;Trebuchet MS&quot;, verdana, sans-serif; margin-left: auto; margin-right: auto;\">"
  + "<table class=\" lightable-minimal\" style='font-family: \"Trebuchet MS\", verdana, sans-serif; margin-left: auto; margin-right: auto;'>"
    " <thead>"
    "  <tr>"
    "   <th style=\"text-align:left;\"> Range </th>"
  
  
  [ FAIL 1 | WARN 0 | SKIP 232 | PASS 6797 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [14s/14s] OK
* checking HTML version of manual ... [17s/16s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs