library(cpr) require(splines) ################################################################################ # derivatives are as expected e <- new.env() with(e, { f0 <- function(x) { #(x + 2) * (x - 1) * (x - 3) x^3 - 2 * x^2 - 5 * x + 6 } f1 <- function(x) { 3 * x^2 - 4 * x - 5 } f2 <- function(x) { 6 * x - 4 } x <- sort(runif(n = 100, min = -3, max = 5)) bknots = c(-3, 5) bmat <- bsplines(x, bknots = bknots) theta <- coef(lm(f0(x) ~ bsplines(x, bknots = bknots) + 0) ) baseD1 <- splines::spline.des(c(-3, -3, -3, -3, 5, 5, 5, 5), x, derivs = rep(1, length(x)))$design cprD1 <- bsplineD(x, bknots = bknots, derivative = 1L) baseD2 <- splines::spline.des(c(-3, -3, -3, -3, 5, 5, 5, 5), x, derivs = rep(2, length(x)))$design cprD2 <- bsplineD(x, bknots = bknots, derivative = 2L) # verify that I can get cubic correct stopifnot(isTRUE(all.equal(f0(x), as.numeric(bmat %*% theta)))) # verify that I can get the first derivative correct -- this is different from # base R in that, by my construction, the derivative at the boundardy knots # should be NA, as the k-fold knots should result in no differentiability at # these points. stopifnot(isTRUE(all.equal(f1(x), as.numeric(cprD1 %*% theta)))) # verify that I can get the second derivative correct stopifnot(isTRUE(all.equal(f2(x), as.numeric(cprD2 %*% theta)))) if (interactive()) { par(mfrow = c(1, 3)) plot(x, f0(x), type = "l") points(x, bmat %*% theta, pch = 2, col = 'blue') plot(x, f1(x), type = "l") points(x, baseD1 %*% theta, pch = 16, col = 'red', cex = 0.7) points(x, cprD1 %*% theta, pch = 2, col = 'blue') plot(x, f2(x), type = "l") points(x, baseD2 %*% theta, pch = 16, col = 'red', cex = 0.7) points(x, cprD2 %*% theta, pch = 2, col = 'blue') } # another set of tests xvec <- seq(-1, 5, length = 100) iknots <- c(-0.8, 0.2, 2.3, 2.5) xi <- sort(c(rep(range(xvec), 4), iknots)) baseD1 <- spline.des(xi, xvec, derivs = rep(1, length(xvec)))$design baseD2 <- spline.des(xi, xvec, derivs = rep(2, length(xvec)))$design cprD1 <- bsplineD(xvec, iknots = iknots, derivative = 1L) cprD2 <- bsplineD(xvec, iknots = iknots, derivative = 2L) stopifnot(isTRUE( all.equal( cprD1[-100, ] , baseD1[-100, ] ) )) stopifnot(isTRUE( all.equal(cprD2[-100, ], baseD2[-100, ]))) x <- tryCatch(bsplineD(xvec, derivative = 1.5), error = function(e) {e}) stopifnot(identical(class(x), c("simpleError", "error", "condition"))) stopifnot(identical(x$message, "Only first and second derivatives are supported")) x <- tryCatch(bsplineD(xvec, derivative = 3), error = function(e) {e}) stopifnot(identical(class(x), c("simpleError", "error", "condition"))) stopifnot(identical(x$message, "Only first and second derivatives are supported")) x <- tryCatch(bsplineD(xvec, order = 2, derivative = 2), error = function(e) {e}) stopifnot(identical(class(x), c("simpleError", "error", "condition"))) stopifnot(identical(x$message, "(order - 2) <= 0")) }) ################################################################################ # verify that order is an integer of at least 2 e <- new.env() with(e, { xvec <- runif(n = 100, min = -1, max = 5) bknots <- c(-1, 5) bmat <- tryCatch(bsplines(xvec, bknots = bknots, order = 1), error = function(e) e) bmatD1 <- tryCatch(bsplineD(xvec, bknots = bknots, order = 1, derivative = 1L), error = function(e) e) bmatD2 <- tryCatch(bsplineD(xvec, bknots = bknots, order = 1, derivative = 2L), error = function(e) e) stopifnot(inherits(bmat, "simpleError")) stopifnot(inherits(bmatD1, "simpleError")) stopifnot(inherits(bmatD2, "simpleError")) stopifnot(identical(bmat$message, "order needs to be an integer value >= 2.")) stopifnot(identical(bmatD1$message, "order needs to be an integer value >= 2.")) stopifnot(identical(bmatD2$message, "order needs to be an integer value >= 2.")) bmat <- tryCatch(bsplines(xvec, bknots = bknots, order = 1.9), error = function(e) e) stopifnot(inherits(bmat, "simpleError")) stopifnot(identical(bmat$message, "order needs to be an integer value >= 2.")) bmat <- tryCatch(bsplines(xvec, bknots = bknots, order = 2.9), error = function(e) e) stopifnot(inherits(bmat, "cpr_bs")) stopifnot(identical(attr(bmat, "order"), 2)) }) ################################################################################ # attributes of bsplineD e <- new.env() with(e, { xvec <- runif(n = 100, min = -1, max = 5) iknots <- c(-0.8, 0.2, 2.3, 2.5) bknots <- c(-1.2, 5.2) bmatD1 <- tryCatch(bsplineD(xvec, iknots = iknots, bknots = bknots, derivative = 1L), error = function(e) e) bmatD2 <- tryCatch(bsplineD(xvec, iknots = iknots, bknots = bknots, derivative = 2L), error = function(e) e) stopifnot(inherits(bmatD1, "cpr_bsD1")) stopifnot(inherits(bmatD2, "cpr_bsD2")) stopifnot(identical( names(attributes(bmatD1)) , c("dim", "order", "df", "iknots", "bknots", "xi", "xi_star", "derivative", "class") ) ) stopifnot(identical( names(attributes(bmatD2)) , c("dim", "order", "df", "iknots", "bknots", "xi", "xi_star", "derivative", "class") ) ) stopifnot(identical(attr(bmatD1, "dim"), c(100L, 8L))) stopifnot(identical(attr(bmatD2, "dim"), c(100L, 8L))) stopifnot(identical(attr(bmatD1, "order"), 4)) stopifnot(identical(attr(bmatD2, "order"), 4)) stopifnot(identical(attr(bmatD1, "df"), 4 + length(iknots))) stopifnot(identical(attr(bmatD2, "df"), 4 + length(iknots))) stopifnot(identical(attr(bmatD1, "iknots"), iknots)) stopifnot(identical(attr(bmatD2, "iknots"), iknots)) stopifnot(identical(attr(bmatD1, "bknots"), bknots)) stopifnot(identical(attr(bmatD2, "bknots"), bknots)) stopifnot(identical(attr(bmatD1, "xi"), sort(c(rep(bknots, 4), iknots)))) stopifnot(identical(attr(bmatD2, "xi"), sort(c(rep(bknots, 4), iknots)))) stopifnot(identical(attr(bmatD1, "derivative"), 1L)) stopifnot(identical(attr(bmatD2, "derivative"), 2L)) }) ################################################################################ ## End of File ## ################################################################################