downloading reverse dependencies ‘adfExplorer’, ‘ambient’, ‘area’, ‘arrow’, ‘astronomyengine’, ‘bases’, ‘bignum’, ‘bigrquery’, ‘binpackr’, ‘blosc’, ‘boostmath’, ‘capybara’, ‘carbondate’, ‘cheapr’, ‘clock’, ‘CMF’, ‘cpp11armadillo’, ‘cpp11bigwig’, ‘cpp11qpdf’, ‘cppdoubles’, ‘densityClust’, ‘EGM’, ‘epiworldR’, ‘fastMatMR’, ‘fastplyr’, ‘frontmatter’, ‘geographiclib’, ‘ggforce’, ‘ggraph’, ‘gtfstools’, ‘haven’, ‘heumilkr’, ‘httpgd’, ‘igraph’, ‘incubate’, ‘interprocess’, ‘isoband’, ‘jinjar’, ‘literanger’, ‘lobstr’, ‘lzstring’, ‘marquee’, ‘measles’, ‘mice’, ‘minired’, ‘minty’, ‘opensimplex2’, ‘particles’, ‘pkgstats’, ‘poputils’, ‘ProTrackR2’, ‘rar’, ‘RcppAlgos’, ‘RcppBigIntAlgos’, ‘readNSx’, ‘readODS’, ‘readr’, ‘readtextgrid’, ‘readxl’, ‘redatamx’, ‘rjsoncons’, ‘RMariaDB’, ‘roxygen2’, ‘RPostgres’, ‘RSQLite’, ‘shide’, ‘shinytest2’, ‘SpatialKDE’, ‘spatialsample’, ‘stochtree’, ‘supercells’, ‘svglite’, ‘systemfonts’, ‘tardis’, ‘textshaping’, ‘tidyfast’, ‘tidygraph’, ‘tidyr’, ‘timechange’, ‘timeplyr’, ‘tipitaka’, ‘transformr’, ‘triptych’, ‘tweenr’, ‘twosamples’, ‘tzdb’, ‘unigd’, ‘valr’, ‘vapour’, ‘vdiffr’, ‘vroom’, ‘websocket’, ‘wstats’, ‘asciicast’, ‘cpp11eigen’, ‘OmopViewer’, ‘PhenotypeR’, ‘pkgbuild’, ‘pudu’, ‘Rcereal’, ‘renv’ trying URL 'file:///data/Repositories/CRAN/src/contrib/adfExplorer_2.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ambient_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/area_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/arrow_23.0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/astronomyengine_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bases_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bignum_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bigrquery_1.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/binpackr_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/blosc_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/boostmath_1.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/capybara_1.8.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/carbondate_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cheapr_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/clock_0.7.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CMF_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cpp11armadillo_0.5.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cpp11bigwig_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cpp11qpdf_1.3.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cppdoubles_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/densityClust_0.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EGM_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/epiworldR_0.14.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fastMatMR_1.2.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fastplyr_0.9.91.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/frontmatter_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/geographiclib_0.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggforce_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggraph_2.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gtfstools_1.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/haven_2.5.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/heumilkr_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/httpgd_2.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/igraph_2.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/incubate_1.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/interprocess_1.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/isoband_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/jinjar_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/literanger_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/lobstr_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/lzstring_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/marquee_1.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/measles_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mice_3.19.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/minired_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/minty_0.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/opensimplex2_0.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/particles_0.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pkgstats_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/poputils_0.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ProTrackR2_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rar_0.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RcppAlgos_2.10.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RcppBigIntAlgos_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/readNSx_0.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/readODS_2.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/readr_2.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/readtextgrid_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/readxl_1.4.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/redatamx_1.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rjsoncons_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RMariaDB_1.3.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/roxygen2_7.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RPostgres_1.4.10.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RSQLite_2.4.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shide_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinytest2_0.5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SpatialKDE_0.8.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/spatialsample_0.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/stochtree_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/supercells_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/svglite_2.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/systemfonts_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tardis_0.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/textshaping_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tidyfast_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tidygraph_1.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tidyr_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/timechange_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/timeplyr_1.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tipitaka_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/transformr_0.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/triptych_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tweenr_2.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/twosamples_2.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tzdb_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/unigd_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/valr_0.9.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/vapour_0.16.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/vdiffr_1.0.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/vroom_1.7.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/websocket_1.4.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/wstats_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/asciicast_2.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cpp11eigen_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopViewer_0.7.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PhenotypeR_0.3.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pkgbuild_1.4.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pudu_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Rcereal_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/renv_1.2.0.tar.gz' installing dependencies ‘adj’, ‘ami’, ‘AmigaFFH’, ‘bigrquerystorage’, ‘CDMConnector’, ‘cheapr’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘cpp11’, ‘cpp11armadillo’, ‘cpp11bigwig’, ‘cppdoubles’, ‘distro’, ‘dplyr’, ‘DrugUtilisation’, ‘epiworldR’, ‘fastplyr’, ‘gtfsio’, ‘hedgehog’, ‘IncidencePrevalence’, ‘influenceR’, ‘kendallknight’, ‘literanger’, ‘MeasurementDiagnostics’, ‘modules’, ‘monotone’, ‘netplot’, ‘netrankr’, ‘NetSwan’, ‘OmopSketch’, ‘ProTrackR’, ‘ProTrackR2’, ‘Rcereal’, ‘RcppBigIntAlgos’, ‘recipes’, ‘repurrrsive’, ‘rhino’, ‘rvec’, ‘shiny.fluent’, ‘shinyTree’, ‘shinyvalidate’, ‘stars’, ‘tomledit’, ‘unigd’, ‘yaml12’ Warning: package ‘NetSwan’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘box.linters’, ‘box.lsp’, ‘shiny.react’ begin installing package ‘box.lsp’ begin installing package ‘box.linters’ begin installing package ‘shiny.react’ begin installing package ‘AmigaFFH’ begin installing package ‘distro’ begin installing package ‘adj’ begin installing package ‘bigrquerystorage’ begin installing package ‘hedgehog’ begin installing package ‘kendallknight’ begin installing package ‘cpp11’ begin installing package ‘tomledit’ begin installing package ‘yaml12’ begin installing package ‘gtfsio’ begin installing package ‘Rcereal’ begin installing package ‘ami’ begin installing package ‘rvec’ begin installing package ‘ProTrackR’ begin installing package ‘shinyvalidate’ begin installing package ‘repurrrsive’ begin installing package ‘monotone’ begin installing package ‘shinyTree’ begin installing package ‘modules’ begin installing package ‘dplyr’ begin installing package ‘stars’ * installing *source* package ‘distro’ ... ** this is package ‘distro’ version ‘0.1.1’ ** package ‘distro’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distro) * installing *source* package ‘box.lsp’ ... ** this is package ‘box.lsp’ version ‘0.1.4’ ** package ‘box.lsp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (box.lsp) * installing *source* package ‘modules’ ... ** this is package ‘modules’ version ‘0.13.0’ ** package ‘modules’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modules) * installing *source* package ‘cpp11’ ... ** this is package ‘cpp11’ version ‘0.5.4’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11) begin installing package ‘netplot’ begin installing package ‘influenceR’ begin installing package ‘netrankr’ begin installing package ‘ProTrackR2’ begin installing package ‘cpp11armadillo’ begin installing package ‘cheapr’ begin installing package ‘unigd’ begin installing package ‘epiworldR’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) begin installing package ‘RcppBigIntAlgos’ * installing *source* package ‘Rcereal’ ... ** this is package ‘Rcereal’ version ‘1.3.2’ ** package ‘Rcereal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcereal) begin installing package ‘cppdoubles’ * installing *source* package ‘shinyvalidate’ ... ** this is package ‘shinyvalidate’ version ‘0.1.3’ ** package ‘shinyvalidate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyvalidate) begin installing package ‘cpp11bigwig’ * installing *source* package ‘ami’ ... ** this is package ‘ami’ version ‘0.2.1’ ** package ‘ami’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ami) begin installing package ‘shiny.fluent’ * installing *source* package ‘gtfsio’ ... ** this is package ‘gtfsio’ version ‘1.2.0’ ** package ‘gtfsio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtfsio) begin installing package ‘literanger’ * installing *source* package ‘monotone’ ... ** this is package ‘monotone’ version ‘0.1.2’ ** package ‘monotone’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp11DN7U/R.INSTALL2ddb5154903b51/monotone/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bimonotoneC.c -o bimonotoneC.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c legacyC.c -o legacyC.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c monotoneC.c -o monotoneC.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unimonotoneC.c -o unimonotoneC.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o monotone.so bimonotoneC.o init.o legacyC.o monotoneC.o unimonotoneC.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp11DN7U/R.INSTALL2ddb5154903b51/monotone/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-monotone/00new/monotone/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (monotone) * installing *source* package ‘adj’ ... ** this is package ‘adj’ version ‘0.1.0’ ** package ‘adj’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeuFBys/R.INSTALL2ddb2919cc7c5/adj/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c index.c -o index.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o adj.so index.o init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeuFBys/R.INSTALL2ddb2919cc7c5/adj/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adj/00new/adj/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adj) * installing *source* package ‘hedgehog’ ... ** this is package ‘hedgehog’ version ‘0.2’ ** package ‘hedgehog’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hedgehog) * installing *source* package ‘repurrrsive’ ... ** this is package ‘repurrrsive’ version ‘1.1.0’ ** package ‘repurrrsive’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (repurrrsive) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘box.linters’ ... ** this is package ‘box.linters’ version ‘0.10.7’ ** package ‘box.linters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ! The packages {treesitter} and {treesitter.r} are required by namespaced_function_calls(). Please install these packages if you want to use namespaced_function_calls(). They require R version >= 4.3.0. ! The packages {treesitter} and {treesitter.r} are required by namespaced_function_calls(). Please install these packages if you want to use namespaced_function_calls(). They require R version >= 4.3.0. ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (box.linters) begin installing package ‘rhino’ * installing *source* package ‘influenceR’ ... ** this is package ‘influenceR’ version ‘0.1.5’ ** package ‘influenceR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHJHBT6/R.INSTALL2de1a84dd30844/influenceR/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bridging.c -o bridging.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keyplayer-utils.c -o keyplayer-utils.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keyplayer.c -o keyplayer.o keyplayer.c: In function ‘keyplayer_driver’: keyplayer.c:33:8: warning: unused variable ‘allsets’ [-Wunused-variable] 33 | int *allsets; | ^~~~~~~ keyplayer.c:32:11: warning: unused variable ‘fits’ [-Wunused-variable] 32 | double *fits; | ^~~~ keyplayer.c:30:31: warning: unused variable ‘stop’ [-Wunused-variable] 30 | int np, rank, new_rank = 0, stop; | ^~~~ keyplayer.c:30:17: warning: unused variable ‘new_rank’ [-Wunused-variable] 30 | int np, rank, new_rank = 0, stop; | ^~~~~~~~ keyplayer.c:30:11: warning: unused variable ‘rank’ [-Wunused-variable] 30 | int np, rank, new_rank = 0, stop; | ^~~~ keyplayer.c:30:7: warning: unused variable ‘np’ [-Wunused-variable] 30 | int np, rank, new_rank = 0, stop; | ^~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c packagename_init.c -o packagename_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prefix_sums.c -o prefix_sums.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c process_sparse.c -o process_sparse.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snap_wrapper.c -o snap_wrapper.o snap_wrapper.c: In function ‘snap_keyplayer_R’: snap_wrapper.c:194:7: warning: unused variable ‘r’ [-Wunused-variable] 194 | int r = read_graph_from_edgelist(&G, E, n, m); | ^ snap_wrapper.c: In function ‘snap_bridging_R’: snap_wrapper.c:223:7: warning: unused variable ‘r’ [-Wunused-variable] 223 | int r = read_graph_from_edgelist(&G, E, n, m); | ^ snap_wrapper.c:219:5: warning: unused variable ‘mpi’ [-Wunused-variable] 219 | mpi = INTEGER(sMPI)[0]; // use mpi? | ^~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vertex_betweenness_centrality.c -o vertex_betweenness_centrality.o vertex_betweenness_centrality.c: In function ‘vertex_betweenness_centrality_parBFS’: vertex_betweenness_centrality.c:81:14: warning: variable ‘stream’ set but not used [-Wunused-but-set-variable] 81 | int* stream; | ^~~~~~ vertex_betweenness_centrality.c:66:9: warning: unused variable ‘seed’ [-Wunused-variable] 66 | int seed = 2387; | ^~~~ vertex_betweenness_centrality.c: In function ‘vertex_betweenness_centrality_simple’: vertex_betweenness_centrality.c:549:13: warning: unused variable ‘myLock’ [-Wunused-variable] 549 | int myLock; | ^~~~~~ vertex_betweenness_centrality.c:543:14: warning: variable ‘stream’ set but not used [-Wunused-but-set-variable] 543 | int* stream; | ^~~~~~ vertex_betweenness_centrality.c:519:9: warning: unused variable ‘seed’ [-Wunused-variable] 519 | int seed = 2387; | ^~~~ vertex_betweenness_centrality.c:514:10: warning: unused variable ‘chunkSize’ [-Wunused-variable] 514 | long chunkSize; | ^~~~~~~~~ gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o influenceR.so bridging.o keyplayer-utils.o keyplayer.o packagename_init.o prefix_sums.o process_sparse.o snap_wrapper.o vertex_betweenness_centrality.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHJHBT6/R.INSTALL2de1a84dd30844/influenceR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-influenceR/00new/influenceR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (influenceR) * installing *source* package ‘kendallknight’ ... ** this is package ‘kendallknight’ version ‘1.0.1’ ** package ‘kendallknight’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcyWWv5/R.INSTALL2ddb1a5464fe96/kendallknight/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cpp4r/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp4r.cpp -o cpp4r.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cpp4r/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c kendall_correlation.cpp -o kendall_correlation.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o kendallknight.so cpp4r.o kendall_correlation.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcyWWv5/R.INSTALL2ddb1a5464fe96/kendallknight/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kendallknight/00new/kendallknight/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kendallknight) * installing *source* package ‘shiny.fluent’ ... ** this is package ‘shiny.fluent’ version ‘0.4.0’ ** package ‘shiny.fluent’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.fluent) * installing *source* package ‘cppdoubles’ ... ** this is package ‘cppdoubles’ version ‘0.4.0’ ** package ‘cppdoubles’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7ABuux/R.INSTALL2de1f240454663/cppdoubles/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c doubles.cpp -o doubles.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o cppdoubles.so cpp11.o doubles.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7ABuux/R.INSTALL2de1f240454663/cppdoubles/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cppdoubles/00new/cppdoubles/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cppdoubles) * installing *source* package ‘rhino’ ... ** this is package ‘rhino’ version ‘1.11.0’ ** package ‘rhino’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhino) * installing *source* package ‘netplot’ ... ** this is package ‘netplot’ version ‘0.3-0’ ** package ‘netplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (netplot) * installing *source* package ‘cpp11armadillo’ ... ** this is package ‘cpp11armadillo’ version ‘0.5.4’ ** package ‘cpp11armadillo’ successfully unpacked and MD5 sums checked ** using staged installation ================================== Compiler Configuration Variables CPP11_INCLUDE_PATH: /home/hornik/tmp/CRAN_recheck/Library/cpp11/include INST_INCLUDE_PATH: ./inst/include PKG_CPPFLAGS: -I./inst/include -I/home/hornik/tmp/CRAN_recheck/Library/cpp11/include =================================== Testing minimal Armadillo example using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5j3esA/R.INSTALL2de1b8138bd8e8/cpp11armadillo' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./inst/include -I/home/hornik/tmp/CRAN_recheck/Library/cpp11/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c conftest.cpp -o conftest.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o conftest.so conftest.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5j3esA/R.INSTALL2de1b8138bd8e8/cpp11armadillo' Armadillo is compatible with the C++ compiler used by R. ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11armadillo) * installing *source* package ‘rvec’ ... ** this is package ‘rvec’ version ‘1.0.1’ ** package ‘rvec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvec) * installing *source* package ‘AmigaFFH’ ... ** this is package ‘AmigaFFH’ version ‘0.4.8’ ** package ‘AmigaFFH’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AmigaFFH) * installing *source* package ‘ProTrackR’ ... ** this is package ‘ProTrackR’ version ‘0.4.4’ ** package ‘ProTrackR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProTrackR) * installing *source* package ‘stars’ ... ** this is package ‘stars’ version ‘0.7-2’ ** package ‘stars’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"stars","Raster"’: no definition for class “Raster” in method for ‘coerce’ with signature ‘"stars_proxy","Raster"’: no definition for class “Raster” in method for ‘coerce’ with signature ‘"stars","SpatRaster"’: no definition for class “SpatRaster” in method for ‘coerce’ with signature ‘"stars_proxy","SpatRaster"’: no definition for class “SpatRaster” in method for ‘coerce’ with signature ‘"stars","STFDF"’: no definition for class “STFDF” in method for ‘coerce’ with signature ‘"stars","Spatial"’: no definition for class “Spatial” ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stars) * installing *source* package ‘dplyr’ ... ** this is package ‘dplyr’ version ‘1.2.1’ ** package ‘dplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkJ5eA9/R.INSTALL2ddb558c25398/dplyr/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chop.cpp -o chop.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c filter.cpp -o filter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c funs.cpp -o funs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c group_by.cpp -o group_by.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c group_data.cpp -o group_data.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c imports.cpp -o imports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mask.cpp -o mask.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mutate.cpp -o mutate.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c reconstruct.cpp -o reconstruct.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slice.cpp -o slice.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summarise.cpp -o summarise.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkJ5eA9/R.INSTALL2ddb558c25398/dplyr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) begin installing package ‘CohortConstructor’ begin installing package ‘DrugUtilisation’ begin installing package ‘recipes’ begin installing package ‘CDMConnector’ * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.1.0’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘cpp11bigwig’ ... ** this is package ‘cpp11bigwig’ version ‘0.1.3’ ** package ‘cpp11bigwig’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvgJA9m/R.INSTALL2de3b02c869fc2/cpp11bigwig/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11bigwig.cpp -o cpp11bigwig.o (cd libBigWig; make) make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpvgJA9m/R.INSTALL2de3b02c869fc2/cpp11bigwig/src/libBigWig' gcc -c -Wall -O3 -DNOCURL -fpic bwRead.c -o bwRead.o gcc -c -Wall -O3 -DNOCURL -fpic bwStats.c -o bwStats.o gcc -c -Wall -O3 -DNOCURL -fpic bwValues.c -o bwValues.o gcc -c -Wall -O3 -DNOCURL -fpic bwWrite.c -o bwWrite.o gcc -c -Wall -O3 -DNOCURL -fpic io.c -o io.o ar rcs libBigWig.a bwRead.o bwStats.o bwValues.o bwWrite.o io.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpvgJA9m/R.INSTALL2de3b02c869fc2/cpp11bigwig/src/libBigWig' g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o cpp11bigwig.so cpp11.o cpp11bigwig.o -L./libBigWig -lBigWig -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvgJA9m/R.INSTALL2de3b02c869fc2/cpp11bigwig/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cpp11bigwig/00new/cpp11bigwig/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11bigwig) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.6.3’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ * installing *source* package ‘CDMConnector’ ... ** this is package ‘CDMConnector’ version ‘2.5.1’ ** package ‘CDMConnector’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CDMConnector) begin installing package ‘CohortCharacteristics’ begin installing package ‘CohortSurvival’ begin installing package ‘IncidencePrevalence’ * installing *source* package ‘ProTrackR2’ ... ** this is package ‘ProTrackR2’ version ‘0.1.1’ ** package ‘ProTrackR2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdVJrQa/R.INSTALL2de1b266c1585a/ProTrackR2/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/modloaders/pt2_load_mod15.c -o pt2-clone/modloaders/pt2_load_mod15.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/modloaders/pt2_load_mod31.c -o pt2-clone/modloaders/pt2_load_mod31.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/modloaders/pt2_pp_unpack.c -o pt2-clone/modloaders/pt2_pp_unpack.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/modloaders/pt2_xpk_unpack.c -o pt2-clone/modloaders/pt2_xpk_unpack.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_audio.c -o pt2-clone/pt2_audio.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_blep.c -o pt2-clone/pt2_blep.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_config.c -o pt2-clone/pt2_config.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_downsample2x.c -o pt2-clone/pt2_downsample2x.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_helpers.c -o pt2-clone/pt2_helpers.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_hpc.c -o pt2-clone/pt2_hpc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_math.c -o pt2-clone/pt2_math.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_module_loader.c -o pt2-clone/pt2_module_loader.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_module_saver.c -o pt2-clone/pt2_module_saver.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_pattern_viewer.c -o pt2-clone/pt2_pattern_viewer.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_paula.c -o pt2-clone/pt2_paula.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_rcfilters.c -o pt2-clone/pt2_rcfilters.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_replayer_light.c -o pt2-clone/pt2_replayer_light.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_sample_loader.c -o pt2-clone/pt2_sample_loader.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_sampler.c -o pt2-clone/pt2_sampler.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_structs.c -o pt2-clone/pt2_structs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_tables.c -o pt2-clone/pt2_tables.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/pt2_unicode.c -o pt2-clone/pt2_unicode.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/smploaders/pt2_load_aiff.c -o pt2-clone/smploaders/pt2_load_aiff.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/smploaders/pt2_load_iff.c -o pt2-clone/smploaders/pt2_load_iff.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/smploaders/pt2_load_raw.c -o pt2-clone/smploaders/pt2_load_raw.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt2-clone/smploaders/pt2_load_wav.c -o pt2-clone/smploaders/pt2_load_wav.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c get_mod.cpp -o get_mod.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c mod_header.cpp -o mod_header.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c mod_io.cpp -o mod_io.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c mod_render.cpp -o mod_render.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c patterns.cpp -o patterns.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c pt_cell.cpp -o pt_cell.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c pt_cleanup.cpp -o pt_cleanup.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c pt_init.cpp -o pt_init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c samp_io.cpp -o samp_io.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ipt2-clone -fpic -g -O2 -Wall -pedantic -mtune=native -c samples.cpp -o samples.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ProTrackR2.so pt2-clone/modloaders/pt2_load_mod15.o pt2-clone/modloaders/pt2_load_mod31.o pt2-clone/modloaders/pt2_pp_unpack.o pt2-clone/modloaders/pt2_xpk_unpack.o pt2-clone/pt2_audio.o pt2-clone/pt2_blep.o pt2-clone/pt2_config.o pt2-clone/pt2_downsample2x.o pt2-clone/pt2_helpers.o pt2-clone/pt2_hpc.o pt2-clone/pt2_math.o pt2-clone/pt2_module_loader.o pt2-clone/pt2_module_saver.o pt2-clone/pt2_pattern_viewer.o pt2-clone/pt2_paula.o pt2-clone/pt2_rcfilters.o pt2-clone/pt2_replayer_light.o pt2-clone/pt2_sample_loader.o pt2-clone/pt2_sampler.o pt2-clone/pt2_structs.o pt2-clone/pt2_tables.o pt2-clone/pt2_unicode.o pt2-clone/smploaders/pt2_load_aiff.o pt2-clone/smploaders/pt2_load_iff.o pt2-clone/smploaders/pt2_load_raw.o pt2-clone/smploaders/pt2_load_wav.o cpp11.o get_mod.o mod_header.o mod_io.o mod_render.o patterns.o pt_cell.o pt_cleanup.o pt_init.o samp_io.o samples.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdVJrQa/R.INSTALL2de1b266c1585a/ProTrackR2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ProTrackR2/00new/ProTrackR2/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProTrackR2) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘1.0.1’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.1.0’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.1.2’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) begin installing package ‘MeasurementDiagnostics’ * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.1’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘MeasurementDiagnostics’ ... ** this is package ‘MeasurementDiagnostics’ version ‘0.3.0’ ** package ‘MeasurementDiagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MeasurementDiagnostics) * installing *source* package ‘recipes’ ... ** this is package ‘recipes’ version ‘1.3.2’ ** package ‘recipes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (recipes) * installing *source* package ‘RcppBigIntAlgos’ ... ** this is package ‘RcppBigIntAlgos’ version ‘1.1.0’ ** package ‘RcppBigIntAlgos’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7MUxuS/R.INSTALL2de1ec34e1a9c8/RcppBigIntAlgos/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConvertUtils.cpp -o ConvertUtils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Divisors.cpp -o Divisors.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DivisorsUtils.cpp -o DivisorsUtils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GmpConvert.cpp -o GmpConvert.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LenstraECM.cpp -o LenstraECM.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MultiPoly.cpp -o MultiPoly.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NumThreads.cpp -o NumThreads.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PollardRho.cpp -o PollardRho.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Polynomial.cpp -o Polynomial.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PrimeFactorUtils.cpp -o PrimeFactorUtils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PrimeFactorization.cpp -o PrimeFactorization.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c QuadraticSieve.cpp -o QuadraticSieve.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ReduceMatrix.cpp -o ReduceMatrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SieveUtils.cpp -o SieveUtils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SolutionSearch.cpp -o SolutionSearch.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c StdConvert.cpp -o StdConvert.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TonelliShanks.cpp -o TonelliShanks.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RcppBigIntAlgos.so ConvertUtils.o Divisors.o DivisorsUtils.o GmpConvert.o LenstraECM.o MultiPoly.o NumThreads.o PollardRho.o Polynomial.o PrimeFactorUtils.o PrimeFactorization.o QuadraticSieve.o ReduceMatrix.o SieveUtils.o SolutionSearch.o StdConvert.o TonelliShanks.o cpp11.o -lgmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7MUxuS/R.INSTALL2de1ec34e1a9c8/RcppBigIntAlgos/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppBigIntAlgos/00new/RcppBigIntAlgos/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppBigIntAlgos) * installing *source* package ‘cheapr’ ... ** this is package ‘cheapr’ version ‘1.5.0’ ** package ‘cheapr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpyb0pB3/R.INSTALL2de1b41fd51414/cheapr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c altrep.cpp -o altrep.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c api.cpp -o api.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c attrs.cpp -o attrs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cast.cpp -o cast.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c combine.cpp -o combine.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c conditions.cpp -o conditions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcd.cpp -o gcd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c groups.cpp -o groups.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c int64.cpp -o int64.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lag.cpp -o lag.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lists.cpp -o lists.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c math.cpp -o math.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nas.cpp -o nas.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c replace.cpp -o replace.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c scalars.cpp -o scalars.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sequences.cpp -o sequences.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sset.cpp -o sset.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c strings.cpp -o strings.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c which.cpp -o which.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o cheapr.so altrep.o api.o attrs.o cast.o combine.o conditions.o cpp11.o gcd.o groups.o int64.o lag.o lists.o math.o nas.o replace.o scalars.o sequences.o sset.o strings.o utils.o which.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpyb0pB3/R.INSTALL2de1b41fd51414/cheapr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cheapr/00new/cheapr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cheapr) begin installing package ‘fastplyr’ * installing *source* package ‘tomledit’ ... ** this is package ‘tomledit’ version ‘0.1.1’ ** package ‘tomledit’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.92.0 (344c4567c 2025-10-21) (built from a source tarball) Using rustc 1.92.0 (ded5c06cf 2025-12-08) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.94 Compiling unicode-ident v1.0.18 Compiling build-print v0.1.1 Compiling extendr-ffi v0.8.0 Compiling paste v1.0.15 Compiling equivalent v1.0.2 Compiling extendr-api v0.8.0 Compiling quote v1.0.40 Compiling hashbrown v0.15.2 Compiling syn v2.0.100 Compiling indexmap v2.9.0 Compiling winnow v0.7.6 Compiling once_cell v1.21.3 Compiling toml_datetime v0.6.8 Compiling toml_edit v0.22.24 Compiling extendr-macros v0.8.0 Compiling tomledit v0.1.0 (/home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/rust) note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 34.93s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o tomledit.so entrypoint.o -L./rust/target/release -ltomledit -L/home/hornik/tmp/R-d-gcc-15/lib -lR rm -Rf /home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/.cargo /home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9Aj9QX/R.INSTALL2ddb32386fec8e/tomledit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tomledit/00new/tomledit/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tomledit) * installing *source* package ‘yaml12’ ... ** this is package ‘yaml12’ version ‘0.1.0’ ** package ‘yaml12’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.92.0 (344c4567c 2025-10-21) (built from a source tarball) Using rustc 1.92.0 (ded5c06cf 2025-12-08) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o if [ -d ./vendor ]; then \ echo "=== Using offline vendor directory ==="; \ mkdir -p /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo/config.toml; \ elif [ -f ./rust/vendor.tar.xz ]; then \ echo "=== Using offline vendor tarball ==="; \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo/config.toml; \ fi === Using offline vendor tarball === export CARGO_HOME=/home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.103 Compiling quote v1.0.42 Compiling unicode-ident v1.0.22 Compiling autocfg v1.5.0 Compiling num-traits v0.2.19 Compiling extendr-ffi v0.8.1 (https://github.com/extendr/extendr?rev=a3e35fb42a008d0c209e61d994143d00a86e350f#a3e35fb4) Compiling thiserror v2.0.17 Compiling syn v2.0.111 Compiling foldhash v0.1.5 Compiling paste v1.0.15 Compiling hashbrown v0.15.5 Compiling lazy_static v1.5.0 Compiling arraydeque v0.5.1 Compiling extendr-api v0.8.1 (https://github.com/extendr/extendr?rev=a3e35fb42a008d0c209e61d994143d00a86e350f#a3e35fb4) Compiling cfg-if v1.0.4 Compiling encoding_rs v0.8.35 Compiling thiserror-impl v2.0.17 Compiling extendr-macros v0.8.1 (https://github.com/extendr/extendr?rev=a3e35fb42a008d0c209e61d994143d00a86e350f#a3e35fb4) Compiling saphyr-parser v0.0.6 (https://github.com/t-kalinowski/saphyr?branch=r-patched#73f6994f) Compiling ordered-float v5.1.0 Compiling hashlink v0.10.0 Compiling once_cell v1.21.3 Compiling saphyr v0.0.6 (https://github.com/t-kalinowski/saphyr?branch=r-patched#73f6994f) Compiling yaml12 v0.1.0 (/home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/rust) note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 42.39s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o yaml12.so entrypoint.o -L./rust/target/release -lyaml12 -L/home/hornik/tmp/R-d-gcc-15/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/.cargo /home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF0pQdq/R.INSTALL2ddb2c26f7b9f1/yaml12/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-yaml12/00new/yaml12/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml12) * installing *source* package ‘fastplyr’ ... ** this is package ‘fastplyr’ version ‘0.9.91’ ** package ‘fastplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpChWnsp/R.INSTALL2def863fe2e7fb/fastplyr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c expressions.cpp -o expressions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastplyr.cpp -o fastplyr.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c groups.cpp -o groups.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c imports.cpp -o imports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mask.cpp -o mask.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cheapr/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tidy.cpp -o tidy.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fastplyr.so cpp11.o expressions.o fastplyr.o groups.o imports.o mask.o tidy.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpChWnsp/R.INSTALL2def863fe2e7fb/fastplyr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastplyr/00new/fastplyr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastplyr) * installing *source* package ‘bigrquerystorage’ ... ** this is package ‘bigrquerystorage’ version ‘1.2.2’ ** package ‘bigrquerystorage’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-DNOMINMAX Using PKG_LIBS=-lprotobuf -lgrpc++ -lgrpc -laddress_sorting -lre2 -lupb -lcares -lz -lgpr -lssl -lcrypto -labsl_raw_hash_set -labsl_hashtablez_sampler -labsl_hash -labsl_city -labsl_low_level_hash -labsl_random_distributions -labsl_random_seed_sequences -labsl_random_internal_pool_urbg -labsl_random_internal_randen -labsl_random_internal_randen_hwaes -labsl_random_internal_randen_hwaes_impl -labsl_random_internal_randen_slow -labsl_random_internal_platform -labsl_random_internal_seed_material -labsl_random_seed_gen_exception -labsl_statusor -labsl_status -labsl_cord -labsl_cordz_info -labsl_cord_internal -labsl_cordz_functions -labsl_exponential_biased -labsl_cordz_handle -labsl_crc_cord_state -labsl_crc32c -labsl_crc_internal -labsl_crc_cpu_detect -labsl_bad_optional_access -labsl_strerror -labsl_str_format_internal -labsl_synchronization -labsl_graphcycles_internal -labsl_kernel_timeout_internal -labsl_stacktrace -labsl_symbolize -labsl_debugging_internal -labsl_demangle_internal -labsl_demangle_rust -labsl_decode_rust_punycode -labsl_utf8_for_code_point -labsl_malloc_internal -labsl_time -labsl_civil_time -labsl_strings -labsl_strings_internal -labsl_string_view -labsl_base -Wl,--push-state,--as-needed -latomic -Wl,--pop-state -lrt -labsl_spinlock_wait -labsl_int128 -labsl_throw_delegate -labsl_time_zone -labsl_bad_variant_access -labsl_raw_logging_internal -labsl_log_severity Found C++17 compiler: g++-15 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native Using libprotoc 3.21.12 from /usr/bin/protoc Using /usr/bin/grpc_cpp_plugin ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7BKXrT/R.INSTALL2ddb1767bb2ac5/bigrquerystorage/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/api/field_behavior.pb.cc -o google/api/field_behavior.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/api/http.pb.cc -o google/api/http.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/api/launch_stage.pb.cc -o google/api/launch_stage.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/api/resource.pb.cc -o google/api/resource.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/arrow.pb.cc -o google/cloud/bigquery/storage/v1/arrow.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/avro.pb.cc -o google/cloud/bigquery/storage/v1/avro.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/table.pb.cc -o google/cloud/bigquery/storage/v1/table.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/api/annotations.pb.cc -o google/api/annotations.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/api/client.pb.cc -o google/api/client.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/protobuf.pb.cc -o google/cloud/bigquery/storage/v1/protobuf.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/stream.pb.cc -o google/cloud/bigquery/storage/v1/stream.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/rpc/status.pb.cc -o google/rpc/status.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/storage.pb.cc -o google/cloud/bigquery/storage/v1/storage.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c google/cloud/bigquery/storage/v1/storage.grpc.pb.cc -o google/cloud/bigquery/storage/v1/storage.grpc.pb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c bqs.cpp -o bqs.o bqs.cpp:29:33: warning: unknown option after ‘#pragma GCC diagnostic’ kind [-Wpragmas] 29 | # pragma GCC diagnostic ignored "-Winconsistent-missing-override" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNOMINMAX -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o bigrquerystorage.so google/api/field_behavior.pb.o google/api/http.pb.o google/api/launch_stage.pb.o google/api/resource.pb.o google/cloud/bigquery/storage/v1/arrow.pb.o google/cloud/bigquery/storage/v1/avro.pb.o google/cloud/bigquery/storage/v1/table.pb.o google/api/annotations.pb.o google/api/client.pb.o google/cloud/bigquery/storage/v1/protobuf.pb.o google/cloud/bigquery/storage/v1/stream.pb.o google/rpc/status.pb.o google/cloud/bigquery/storage/v1/storage.pb.o google/cloud/bigquery/storage/v1/storage.grpc.pb.o bqs.o RcppExports.o -lprotobuf -lgrpc++ -lgrpc -laddress_sorting -lre2 -lupb -lcares -lz -lgpr -lssl -lcrypto -labsl_raw_hash_set -labsl_hashtablez_sampler -labsl_hash -labsl_city -labsl_low_level_hash -labsl_random_distributions -labsl_random_seed_sequences -labsl_random_internal_pool_urbg -labsl_random_internal_randen -labsl_random_internal_randen_hwaes -labsl_random_internal_randen_hwaes_impl -labsl_random_internal_randen_slow -labsl_random_internal_platform -labsl_random_internal_seed_material -labsl_random_seed_gen_exception -labsl_statusor -labsl_status -labsl_cord -labsl_cordz_info -labsl_cord_internal -labsl_cordz_functions -labsl_exponential_biased -labsl_cordz_handle -labsl_crc_cord_state -labsl_crc32c -labsl_crc_internal -labsl_crc_cpu_detect -labsl_bad_optional_access -labsl_strerror -labsl_str_format_internal -labsl_synchronization -labsl_graphcycles_internal -labsl_kernel_timeout_internal -labsl_stacktrace -labsl_symbolize -labsl_debugging_internal -labsl_demangle_internal -labsl_demangle_rust -labsl_decode_rust_punycode -labsl_utf8_for_code_point -labsl_malloc_internal -labsl_time -labsl_civil_time -labsl_strings -labsl_strings_internal -labsl_string_view -labsl_base -Wl,--push-state,--as-needed -latomic -Wl,--pop-state -lrt -labsl_spinlock_wait -labsl_int128 -labsl_throw_delegate -labsl_time_zone -labsl_bad_variant_access -labsl_raw_logging_internal -labsl_log_severity -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7BKXrT/R.INSTALL2ddb1767bb2ac5/bigrquerystorage/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigrquerystorage/00new/bigrquerystorage/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigrquerystorage) * installing *source* package ‘unigd’ ... ** this is package ‘unigd’ version ‘0.2.0’ ** package ‘unigd’ successfully unpacked and MD5 sums checked ** using staged installation --- Checking for cairo and freetype2 Found via pkg-config PKG_CFLAGS=-I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 PKG_LIBS=-lcairo -lfreetype OK --- Checking for libtiff Found via pkg-config PKG_LIBTIFF_CFLAGS=-I/usr/include/x86_64-linux-gnu -I/usr/include/webp PKG_LIBTIFF_LIBS=-ltiff -ltiffxx OK --- Checking for libpng Found via pkg-config PKG_LIBPNG_CFLAGS=-I/usr/include/libpng16 PKG_LIBPNG_LIBS=-lpng16 OK (using fallback -lpng if not found via pkg-config) --- Checking for zlib Found via pkg-config PKG_ZLIB_CFLAGS= PKG_ZLIB_LIBS=-lz OK (using fallback -lz if not found via pkg-config) --- Configuration summary PKG_CPPFLAGS=-I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 PKG_LIBS=-lcairo -lfreetype -ltiff -ltiffxx -lpng16 -lz ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVZVS0R/R.INSTALL2de1b9716b18a/unigd/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c base_64.cpp -o base_64.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c compress.cpp -o compress.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c draw_data.cpp -o draw_data.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c page_store.cpp -o page_store.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c plot_history.cpp -o plot_history.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c r_thread_posix.cpp -o r_thread_posix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c r_thread_win32.cpp -o r_thread_win32.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderer_cairo.cpp -o renderer_cairo.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderer_json.cpp -o renderer_json.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderer_meta.cpp -o renderer_meta.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderer_strings.cpp -o renderer_strings.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderer_svg.cpp -o renderer_svg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderer_tikz.cpp -o renderer_tikz.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c renderers.cpp -o renderers.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c unigd.cpp -o unigd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c unigd_dev.cpp -o unigd_dev.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c unigd_external.cpp -o unigd_external.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/libpng16 -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c uuid.cpp -o uuid.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o unigd.so base_64.o compress.o cpp11.o draw_data.o page_store.o plot_history.o r_thread_posix.o r_thread_win32.o renderer_cairo.o renderer_json.o renderer_meta.o renderer_strings.o renderer_svg.o renderer_tikz.o renderers.o unigd.o unigd_dev.o unigd_external.o uuid.o -lcairo -lfreetype -ltiff -ltiffxx -lpng16 -lz -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVZVS0R/R.INSTALL2de1b9716b18a/unigd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-unigd/00new/unigd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unigd) * installing *source* package ‘literanger’ ... ** this is package ‘literanger’ version ‘0.2.0’ ** package ‘literanger’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4MpC0X/R.INSTALL2de68919b71e88/literanger/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/Rcereal/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/Rcereal/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11_io.cpp -o cpp11_io.o In file included from ../src/literanger/Forest.defn.h:35, from ../src/literanger/ForestClassification.defn.h:39, from literanger/ForestClassification.h:18, from cpp11_io.cpp:46: ../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, const literanger::TrainingParameters&, std::shared_ptr, literanger::key_vector&)’: ../src/literanger/TreeBase.defn.h:448:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 447 | const ull_bitenc partition_key = *( | ~ 448 | (unsigned long long *)(&split_value) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | ); | ~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/Rcereal/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11_merge.cpp -o cpp11_merge.o In file included from ../src/literanger/Forest.defn.h:35, from ../src/literanger/ForestClassification.defn.h:39, from literanger/ForestClassification.h:18, from cpp11_merge.cpp:50: ../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, const literanger::TrainingParameters&, std::shared_ptr, literanger::key_vector&)’: ../src/literanger/TreeBase.defn.h:448:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 447 | const ull_bitenc partition_key = *( | ~ 448 | (unsigned long long *)(&split_value) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | ); | ~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/Rcereal/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11_predict.cpp -o cpp11_predict.o In file included from ../src/literanger/Forest.defn.h:35, from ../src/literanger/ForestClassification.defn.h:39, from literanger/ForestClassification.h:18, from cpp11_predict.cpp:47: ../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, const literanger::TrainingParameters&, std::shared_ptr, literanger::key_vector&)’: ../src/literanger/TreeBase.defn.h:448:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 447 | const ull_bitenc partition_key = *( | ~ 448 | (unsigned long long *)(&split_value) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | ); | ~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/Rcereal/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11_train.cpp -o cpp11_train.o In file included from ../src/literanger/Forest.defn.h:35, from ../src/literanger/ForestClassification.defn.h:39, from literanger/ForestClassification.h:18, from cpp11_train.cpp:45: ../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, const literanger::TrainingParameters&, std::shared_ptr, literanger::key_vector&)’: ../src/literanger/TreeBase.defn.h:448:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 447 | const ull_bitenc partition_key = *( | ~ 448 | (unsigned long long *)(&split_value) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | ); | ~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o literanger.so cpp11.o cpp11_io.o cpp11_merge.o cpp11_predict.o cpp11_train.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4MpC0X/R.INSTALL2de68919b71e88/literanger/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-literanger/00new/literanger/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (literanger) * installing *source* package ‘epiworldR’ ... ** this is package ‘epiworldR’ version ‘0.14.0.0’ ** package ‘epiworldR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8QbCi5/R.INSTALL2de1bb57cb781a/epiworldR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c agents.cpp -o agents.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c db.cpp -o db.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c entities.cpp -o entities.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c epimodels.cpp -o epimodels.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c events.cpp -o events.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c lfmcmc.cpp -o lfmcmc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c model-diagram.cpp -o model-diagram.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c model.cpp -o model.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c tool.cpp -o tool.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -c virus.cpp -o virus.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o epiworldR.so agents.o cpp11.o db.o entities.o epimodels.o events.o lfmcmc.o model-diagram.o model.o tool.o virus.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8QbCi5/R.INSTALL2de1bb57cb781a/epiworldR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-epiworldR/00new/epiworldR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epiworldR) * installing *source* package ‘netrankr’ ... ** this is package ‘netrankr’ version ‘1.2.4’ ** package ‘netrankr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEOcOqC/R.INSTALL2de1b12946693b/netrankr/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c approx_expected.cpp -o approx_expected.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c approxrelative.cpp -o approxrelative.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkPairs.cpp -o checkPairs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dependCurFlow.cpp -o dependCurFlow.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dependRspn.cpp -o dependRspn.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dependency.cpp -o dependency.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c latticeOfIdeals.cpp -o latticeOfIdeals.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c listingIdeals.cpp -o listingIdeals.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc_rank.cpp -o mcmc_rank.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nialgo.cpp -o nialgo.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pdalgo.cpp -o pdalgo.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c preserve.cpp -o preserve.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rankProbs.cpp -o rankProbs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rankings.cpp -o rankings.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c resistanceDistance.cpp -o resistanceDistance.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c transreduct.cpp -o transreduct.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c treeOfIdeals.cpp -o treeOfIdeals.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o netrankr.so RcppExports.o approx_expected.o approxrelative.o checkPairs.o dependCurFlow.o dependRspn.o dependency.o latticeOfIdeals.o listingIdeals.o mcmc_rank.o nialgo.o pdalgo.o preserve.o rankProbs.o rankings.o resistanceDistance.o transreduct.o treeOfIdeals.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEOcOqC/R.INSTALL2de1b12946693b/netrankr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-netrankr/00new/netrankr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (netrankr) checking cpp11_0.5.4.tar.gz ... checking adfExplorer_2.1.0.tar.gz ... 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... checking opensimplex2_0.0.3.tar.gz ... checking timeplyr_1.1.2.tar.gz ... checking tardis_0.1.5.tar.gz ... checking tzdb_0.5.0.tar.gz ... checking rjsoncons_1.3.2.tar.gz ... checking unigd_0.2.0.tar.gz ... checking textshaping_1.0.5.tar.gz ... checking renv_1.2.0.tar.gz ... checking readNSx_0.0.6.tar.gz ... checking tidyr_1.3.2.tar.gz ... checking websocket_1.4.4.tar.gz ... checking asciicast_2.3.1.tar.gz ... checking ProTrackR2_0.1.1.tar.gz ... checking lzstring_0.2.0.tar.gz ... checking spatialsample_0.6.1.tar.gz ... checking triptych_0.1.3.tar.gz ... checking wstats_0.1.1.tar.gz ... checking stochtree_0.4.0.tar.gz ... checking svglite_2.2.2.tar.gz ... checking timechange_0.4.0.tar.gz ... checking readODS_2.3.2.tar.gz ... checking readr_2.2.0.tar.gz ... checking Rcereal_1.3.2.tar.gz ... checking literanger_0.2.0.tar.gz ... checking tweenr_2.0.3.tar.gz ... checking measles_0.2.0.tar.gz ... checking OmopViewer_0.7.0.tar.gz ... checking roxygen2_7.3.3.tar.gz ... checking vapour_0.16.0.tar.gz ... checking shinytest2_0.5.1.tar.gz ... checking twosamples_2.0.1.tar.gz ... checking supercells_1.0.0.tar.gz ... checking vroom_1.7.1.tar.gz ... checking pudu_0.1.0.tar.gz ... checking cpp11eigen_0.2.0.tar.gz ... checking pkgbuild_1.4.8.tar.gz ... checking RMariaDB_1.3.5.tar.gz ... checking tipitaka_1.0.0.tar.gz ... checking vdiffr_1.0.9.tar.gz ... checking PhenotypeR_0.3.4.tar.gz ... checking heumilkr_0.3.0.tar.gz ... checking redatamx_1.2.1.tar.gz ... checking valr_0.9.1.tar.gz ... Depends: Package: cpp11 Depends: R (>= 4.0.0) Timings: user system elapsed cpp11 118.243 13.158 138.178 Results: Check status summary: WARNING NOTE OK Source packages 0 0 1 Reverse depends 3 7 91 Check results summary: cpp11 ... OK rdepends_adfExplorer ... OK rdepends_ambient ... OK rdepends_area ... OK rdepends_arrow ... NOTE * checking compiled code ... NOTE rdepends_asciicast ... OK rdepends_astronomyengine ... OK rdepends_bases ... OK rdepends_bignum ... OK rdepends_bigrquery ... OK rdepends_binpackr ... OK rdepends_blosc ... OK rdepends_boostmath ... OK rdepends_capybara ... OK rdepends_carbondate ... OK rdepends_cheapr ... NOTE * checking compiled code ... NOTE rdepends_clock ... OK rdepends_CMF ... OK rdepends_cpp11armadillo ... OK rdepends_cpp11bigwig ... OK rdepends_cpp11eigen ... OK rdepends_cpp11qpdf ... NOTE * checking compiled code ... NOTE rdepends_cppdoubles ... OK rdepends_densityClust ... OK rdepends_EGM ... OK rdepends_epiworldR ... OK rdepends_fastMatMR ... NOTE * checking compiled code ... NOTE rdepends_fastplyr ... WARNING * checking compiled code ... WARNING rdepends_frontmatter ... OK rdepends_geographiclib ... OK rdepends_ggforce ... OK rdepends_ggraph ... OK rdepends_gtfstools ... OK rdepends_haven ... OK rdepends_heumilkr ... OK rdepends_httpgd ... OK rdepends_igraph ... WARNING * checking compiled code ... WARNING rdepends_incubate ... OK rdepends_interprocess ... OK rdepends_isoband ... OK rdepends_jinjar ... OK rdepends_literanger ... OK rdepends_lobstr ... WARNING * checking compiled code ... WARNING rdepends_lzstring ... OK rdepends_marquee ... OK rdepends_measles ... OK rdepends_mice ... NOTE * checking compiled code ... NOTE rdepends_minired ... OK rdepends_minty ... OK rdepends_OmopViewer ... OK rdepends_opensimplex2 ... OK rdepends_particles ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_PhenotypeR ... OK rdepends_pkgbuild ... OK rdepends_pkgstats ... OK rdepends_poputils ... OK rdepends_ProTrackR2 ... OK rdepends_pudu ... OK rdepends_rar ... OK rdepends_Rcereal ... OK rdepends_RcppAlgos ... OK rdepends_RcppBigIntAlgos ... OK rdepends_readNSx ... OK rdepends_readODS ... OK rdepends_readr ... OK rdepends_readtextgrid ... OK rdepends_readxl ... OK rdepends_redatamx ... OK rdepends_renv ... OK rdepends_rjsoncons ... OK rdepends_RMariaDB ... OK rdepends_roxygen2 ... OK rdepends_RPostgres ... OK rdepends_RSQLite ... OK rdepends_shide ... OK rdepends_shinytest2 ... OK rdepends_SpatialKDE ... OK rdepends_spatialsample ... OK rdepends_stochtree ... OK rdepends_supercells ... OK rdepends_svglite ... OK rdepends_systemfonts ... OK rdepends_tardis ... OK rdepends_textshaping ... OK rdepends_tidyfast ... OK rdepends_tidygraph ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_tidyr ... OK rdepends_timechange ... OK rdepends_timeplyr ... OK rdepends_tipitaka ... OK rdepends_transformr ... OK rdepends_triptych ... OK rdepends_tweenr ... OK rdepends_twosamples ... OK rdepends_tzdb ... OK rdepends_unigd ... OK rdepends_valr ... OK rdepends_vapour ... OK rdepends_vdiffr ... OK rdepends_vroom ... OK rdepends_websocket ... OK rdepends_wstats ... OK Check results changes: Package: bigrquery Check: compiled code Old result: NOTE New result: OK Package: clock Check: compiled code Old result: NOTE New result: OK Package: CMF Check: CRAN incoming feasibility Old result: NOTE Package: haven Check: compiled code Old result: NOTE New result: OK Package: jinjar Check: compiled code Old result: NOTE New result: OK Package: rar Check: CRAN incoming feasibility Old result: NOTE Package: readODS Check: compiled code Old result: NOTE New result: OK Package: readr Check: compiled code Old result: NOTE New result: OK Package: readxl Check: compiled code Old result: NOTE New result: OK Package: rjsoncons Check: compiled code Old result: NOTE New result: OK Package: RPostgres Check: compiled code Old result: NOTE New result: OK Package: RSQLite Check: compiled code Old result: NOTE New result: OK Package: shide Check: compiled code Old result: NOTE New result: OK Package: supercells Check: compiled code Old result: NOTE New result: OK Package: svglite Check: compiled code Old result: NOTE New result: OK Package: systemfonts Check: compiled code Old result: NOTE New result: OK Package: tidyfast Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: twosamples Check: CRAN incoming feasibility Old result: NOTE Package: unigd Check: compiled code Old result: NOTE New result: OK Package: vapour Check: compiled code Old result: NOTE New result: OK Package: vroom Check: compiled code Old result: NOTE New result: OK