R Under development (unstable) (2023-08-14 r84947 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(contsurvplot) Please cite as: Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. > library(survival) > library(testthat) > > test_check("contsurvplot") Loading required namespace: doParallel starting worker pid=127352 on localhost:11431 at 09:46:17.089 starting worker pid=8428 on localhost:11431 at 09:46:17.089 Loading required package: contsurvplot Loading required package: contsurvplot Please cite as: Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. Please cite as: Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. loaded contsurvplot and set parent environment loaded contsurvplot and set parent environment starting worker pid=126128 on localhost:11431 at 09:46:19.701 starting worker pid=201936 on localhost:11431 at 09:46:19.709 Please cite as: Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. Please cite as: Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. Loading required namespace: reshape2 [,1] [,2] [,3] [,4] [1,] -1.683820e-02 -0.009974886 0.02740577 -0.02740577 [2,] 3.173655e-02 -0.006266870 0.01721809 -0.01721809 [3,] -1.068546e-16 1.893571876 0.68920380 -0.68920380 [4,] -2.826787e-01 -0.429675811 -4.51947159 5.51947159 [,1] [,2] [,3] [,4] [1,] -1.683820e-02 -0.009974886 0.02740577 -0.02740577 [2,] 3.173655e-02 -0.006266870 0.01721809 -0.01721809 [3,] -1.068546e-16 1.893571876 0.68920380 -0.68920380 [4,] -2.826787e-01 -0.415489177 -4.51430808 5.51430808 [,1] [,2] [,3] [,4] [1,] -3.333333e-02 -0.01974654 0.05425318 -0.05425318 [2,] 3.173655e-02 -0.00626687 0.01721809 -0.01721809 [3,] -1.082650e-16 1.91856670 0.69830117 -0.69830117 [4,] 6.243261e-01 0.08263563 -6.00480579 7.00480579 [,1] [,2] [,3] [,4] [1,] -1.683820e-02 -0.009974886 0.02740577 -0.02740577 [2,] 5.773503e-02 -0.011400671 0.03132309 -0.03132309 [3,] -1.397284e-16 2.476130317 0.90123773 -0.90123773 [4,] -2.730302e-01 -1.014139490 -4.72627092 5.72627092 [,1] [,2] [,3] [,4] [1,] -3.164546e-02 0.005759003 -0.009974886 0.009974886 [2,] -1.253374e-02 -0.017218085 0.029822598 -0.029822598 [3,] 4.220017e-17 1.745125280 1.007548550 -1.007548550 [4,] 1.460297e+00 -0.606835265 -3.711175498 4.711175498 Loading required namespace: plotly Loading required namespace: gganimate Loading required namespace: transformr Loading required namespace: pammtools [ FAIL 0 | WARN 0 | SKIP 78 | PASS 228 ] ══ Skipped tests (78) ══════════════════════════════════════════════════════════ • On CRAN (78): 'test_plot_surv_3Dsurface.r:13:3', 'test_plot_surv_3Dsurface.r:21:3', 'test_plot_surv_3Dsurface.r:28:3', 'test_plot_surv_3Dsurface.r:35:3', 'test_plot_surv_3Dsurface.r:43:3', 'test_plot_surv_area.r:20:3', 'test_plot_surv_area.r:27:3', 'test_plot_surv_area.r:34:3', 'test_plot_surv_area.r:42:3', 'test_plot_surv_area.r:49:3', 'test_plot_surv_area.r:56:3', 'test_plot_surv_area.r:64:3', 'test_plot_surv_area.r:71:3', 'test_plot_surv_area.r:79:3', 'test_plot_surv_area.r:88:3', 'test_plot_surv_area.r:97:3', 'test_plot_surv_area.r:109:3', 'test_plot_surv_at_t.r:17:3', 'test_plot_surv_at_t.r:25:3', 'test_plot_surv_at_t.r:33:3', 'test_plot_surv_at_t.r:41:3', 'test_plot_surv_at_t.r:49:3', 'test_plot_surv_at_t.r:57:3', 'test_plot_surv_at_t.r:64:3', 'test_plot_surv_at_t.r:74:3', 'test_plot_surv_contour.r:27:3', 'test_plot_surv_contour.r:37:3', 'test_plot_surv_contour.r:47:3', 'test_plot_surv_contour.r:57:3', 'test_plot_surv_contour.r:67:3', 'test_plot_surv_contour.r:79:3', 'test_plot_surv_contour.r:90:3', 'test_plot_surv_contour.r:106:3', 'test_plot_surv_heatmap.r:23:3', 'test_plot_surv_heatmap.r:30:3', 'test_plot_surv_heatmap.r:37:3', 'test_plot_surv_heatmap.r:44:3', 'test_plot_surv_heatmap.r:51:3', 'test_plot_surv_heatmap.r:59:3', 'test_plot_surv_heatmap.r:67:3', 'test_plot_surv_heatmap.r:76:3', 'test_plot_surv_heatmap.r:92:3', 'test_plot_surv_lines.r:15:3', 'test_plot_surv_lines.r:25:3', 'test_plot_surv_lines.r:34:3', 'test_plot_surv_lines.r:41:3', 'test_plot_surv_lines.r:48:3', 'test_plot_surv_lines.r:55:3', 'test_plot_surv_lines.r:62:3', 'test_plot_surv_lines.r:71:3', 'test_plot_surv_lines.r:79:3', 'test_plot_surv_lines.r:89:3', 'test_plot_surv_matrix.r:15:3', 'test_plot_surv_matrix.r:22:3', 'test_plot_surv_matrix.r:29:3', 'test_plot_surv_matrix.r:36:3', 'test_plot_surv_matrix.r:44:3', 'test_plot_surv_matrix.r:52:3', 'test_plot_surv_matrix.r:59:3', 'test_plot_surv_matrix.r:67:3', 'test_plot_surv_matrix.r:77:3', 'test_plot_surv_matrix.r:84:3', 'test_plot_surv_quantiles.r:15:3', 'test_plot_surv_quantiles.r:22:3', 'test_plot_surv_quantiles.r:29:3', 'test_plot_surv_quantiles.r:37:3', 'test_plot_surv_quantiles.r:45:3', 'test_plot_surv_quantiles.r:55:3', 'test_plot_surv_rmst.r:15:3', 'test_plot_surv_rmst.r:22:3', 'test_plot_surv_rmst.r:30:3', 'test_plot_surv_rmst.r:38:3', 'test_plot_surv_rmst.r:48:3', 'test_plot_surv_rmtl.r:15:3', 'test_plot_surv_rmtl.r:22:3', 'test_plot_surv_rmtl.r:30:3', 'test_plot_surv_rmtl.r:38:3', 'test_plot_surv_rmtl.r:48:3' [ FAIL 0 | WARN 0 | SKIP 78 | PASS 228 ] Deleting unused snapshots: • plot_surv_contour/plot-at-t.svg • plot_surv_contour/plot-change-horizon.svg • plot_surv_contour/plot-cif.svg • plot_surv_contour/plot-custom-colors.svg • plot_surv_contour/plot-defaults.svg • plot_surv_contour/plot-lots-of-stuff.svg • plot_surv_contour/plot-panel-border-axis-dist.svg • plot_surv_contour/plot-with-group.svg • plot_surv_heatmap/plot-contour-lines.svg > > proc.time() user system elapsed 75.81 2.26 83.31