* installing *source* package ‘conos’ ... ** this is package ‘conos’ version ‘1.5.3’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Rjnmf.cpp -o Rjnmf.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c adjustedRand.cpp -o adjustedRand.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c checkfunctions.cpp -o checkfunctions.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpca.cpp -o cpca.o cpca.cpp: In function ‘Rcpp::List cpcaF(const arma::cube&, const arma::vec&, int, int, double, Rcpp::Nullable >, bool)’: cpca.cpp:25:8: warning: unused variable ‘converged’ [-Wunused-variable] 25 | bool converged=false; | ^~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c deltacut.cpp -o deltacut.o deltacut.cpp: In function ‘double normalized_entropy(arma::ivec&, int)’: deltacut.cpp:110:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 110 | if(*i == labels.n_elem) { return(0.0); } // extreme case | ~~~^~~~~~~~~~~~~~~~ deltacut.cpp: In function ‘Rcpp::List greedyModularityCutC(arma::imat&, arma::vec&, int, int, arma::ivec&, double, bool)’: deltacut.cpp:267:13: warning: unused variable ‘ni’ [-Wunused-variable] 267 | int ni=r[i]=idm[r[i]]=leafid++; | ^~ deltacut.cpp: In function ‘Rcpp::List _treeJaccard(arma::imat&, arma::imat&, arma::ivec&, arma::ivec&)’: deltacut.cpp:312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 312 | for(int i=0;i&>)’: deltacut.cpp:355:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 355 | if(nleafs != clusters.n_cols) stop("number of leafs differs from the number of columns in the clusters matrix"); | ~~~~~~~^~~~~~~~~~~~~~~~~~ deltacut.cpp:375:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 375 | for(int i=0;i > get_membership_indices(int, arma::imat&, IIVM&)’: deltacut.cpp:405:7: warning: unused variable ‘nleafs’ [-Wunused-variable] 405 | int nleafs=merges.n_rows+1; // number of leafs in the tree | ^~~~~~ deltacut.cpp: In function ‘Rcpp::List scoreTreeConsistency(arma::imat&, arma::imat&, arma::ivec&, int)’: deltacut.cpp:429:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 429 | for(int i=0;i=leafidmap.n_elem) throw std::range_error("requesting out of range node in leafidmap"); | ~^~~~~~~~~~~~~~~~~~ deltacut.cpp:487:96: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 487 | Rcout<<"idmap violation at j="< k && jklow) { | ~^~~~~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c edge_rebalancing.cpp -o edge_rebalancing.o edge_rebalancing.cpp: In function ‘Rcpp::NumericMatrix getSumWeightMatrix(const std::vector&, const std::vector&, const std::vector&, const std::vector&, bool)’: edge_rebalancing.cpp:18:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18 | for (int i = 0; i < weights.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ edge_rebalancing.cpp: In function ‘std::vector adjustWeightsByCellBalancingC(std::vector, const std::vector&, const std::vector&, const std::vector&, Rcpp::NumericMatrix)’: edge_rebalancing.cpp:41:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 41 | for (int i = 0; i < weights.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c edgeweights.cpp -o edgeweights.o edgeweights.cpp: In member function ‘Eigen::SparseMatrix ReferenceEdges::getWIJ()’: edgeweights.cpp:149:31: warning: comparison of integer expressions of different signedness: ‘edgeidxtype’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 149 | for (edgeidxtype i = 0; i < edge_from.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c gradients.cpp -o gradients.o gradients.cpp: In member function ‘distancetype Gradient::distAndVector(const coordinatetype*, const coordinatetype*, coordinatetype*) const’: gradients.cpp:21:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const dimidxtype’ {aka ‘const unsigned int’} [-Wsign-compare] 21 | for (int d = 0; d < D; d++) { | ~~^~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c graph_embedding.cpp -o graph_embedding.o graph_embedding.cpp: In function ‘std::unordered_map get_hitting_time_map(const std::vector&, const std::vector&)’: graph_embedding.cpp:66:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int v2 = 0; v2 < adjacent_ids.size(); ++v2) { | ~~~^~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘void dfs_hitting_time(const std::vector >&, const std::vector >&, int, std::vector&, path_map_t&, double, int, double, int, double)’: graph_embedding.cpp:126:55: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | if ((current_prob < min_prob && result_paths.size() >= min_visited_verts) || current_prob < min_prob_lower) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:131:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 131 | for (int i = 0; i < adjacency_list.at(vertex_id).size(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘std::pair, std::vector > hitting_time_per_neighbor(const std::vector >&, const std::vector >&, int, double, int, double, int)’: graph_embedding.cpp:152:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | if (start_vertex < 0 || start_vertex >= adjacency_list.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘std::pair >, std::vector > > hitting_time_per_neighbors(const std::vector >&, const std::vector >&, int, int, double, int, double, int, bool)’: graph_embedding.cpp:188:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | if (n_verts <= 0 || n_verts >= adjacency_list.size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘Rcpp::List commute_time_per_node(const std::vector >&, const std::vector >&, int, int, bool)’: graph_embedding.cpp:247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 247 | for (int v1 = 0; v1 < adjacency_list.size(); ++v1) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:276:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 276 | for (int v1 = 0; v1 < hitting_times_map.size(); ++v1) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In instantiation of ‘std::vector reorder(const std::vector&, std::vector, size_t) [with T = double; size_t = long unsigned int]’: graph_embedding.cpp:171:31: required from here 171 | auto values_sorted = reorder(values, sorted_ids, max_adj_num); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:39:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 39 | for (int i = 0; i < max_size; ++i) { | ~~^~~~~~~~~~ graph_embedding.cpp: In instantiation of ‘std::vector reorder(const std::vector&, std::vector, size_t) [with T = int; size_t = long unsigned int]’: graph_embedding.cpp:172:32: required from here 172 | auto indexes_sorted = reorder(indexes, sorted_ids, max_adj_num); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:39:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 39 | for (int i = 0; i < max_size; ++i) { | ~~^~~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c largeVis.cpp -o largeVis.o largeVis.cpp: In constructor ‘MomentumVisualizer::MomentumVisualizer(vertexidxtype*, vertexidxtype*, coordinatetype*, const dimidxtype&, const vertexidxtype&, const edgeidxtype&, distancetype, const iterationtype&, const float&, const unsigned int&, const double&, const double&)’: largeVis.cpp:164:45: warning: comparison of integer expressions of different signedness: ‘vertexidxtype’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 164 | for (vertexidxtype i = 0; i != D*N; ++i) momentumarray[i] = 0; | ~~^~~~~~ largeVis.cpp: In function ‘arma::mat sgd(arma::mat&, arma::ivec&, arma::ivec&, arma::ivec&, arma::vec&, const double&, const double&, const arma::uword&, const int&, const double&, Rcpp::Nullable >, const bool&, Rcpp::Nullable >, Rcpp::Nullable >, bool)’: largeVis.cpp:254:43: warning: comparison of integer expressions of different signedness: ‘edgeidxtype’ {aka ‘int’} and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 254 | for (edgeidxtype e = 0; e < targets_i.n_elem; ++e) negweights[targets_i[e]]++; | ~~^~~~~~~~~~~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c propagate_labels.cpp -o propagate_labels.o propagate_labels.cpp: In function ‘si_map_t parse_edges(const Rcpp::StringMatrix&, const std::vector&, std::vector&, s_vec_t)’: propagate_labels.cpp:42:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 42 | if (edge_verts.nrow() != edge_weights.size() || edge_verts.ncol() != 2) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:50:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 50 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:57:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 57 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { // TODO: add informative message in case vertex name is not presented in the map | ~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘Rcpp::NumericMatrix propagate_labels(const Rcpp::StringMatrix&, const std::vector&, const Rcpp::StringVector&, int, bool, double, double, double, bool)’: propagate_labels.cpp:69:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 69 | if (edge_verts.nrow() != edge_weights.size() || edge_verts.ncol() != 2) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:80:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 80 | for (size_t i = 0; i < vert_labels.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:95:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 95 | for (int v_id = 0; v_id < vertex_ids.size(); ++v_id) { | ~~~~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:96:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int l_id = 0; l_id < label_ids.size(); ++l_id) { | ~~~~~^~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘void smooth_count_matrix_c(const std::vector&, Mat&, int, double, double, double, bool, bool, const std::vector&)’: propagate_labels.cpp:162:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 162 | for (size_t row_id = 0; row_id < cm_new.rows(); ++row_id) { | ~~~~~~~^~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘SEXPREC* smooth_count_matrix(const Rcpp::StringMatrix&, const std::vector&, const Rcpp::NumericMatrix&, const std::vector&, int, double, double, double, bool, bool)’: propagate_labels.cpp:192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 192 | if (edge_verts.nrow() != edge_weights.size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘Rcpp::List adjacent_vertices(const Rcpp::StringMatrix&)’: propagate_labels.cpp:228:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 228 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘Rcpp::List adjacent_vertex_weights(const Rcpp::StringMatrix&, const std::vector&)’: propagate_labels.cpp:241:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 241 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c spcov.cpp -o spcov.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o conos.so RcppExports.o Rjnmf.o adjustedRand.o checkfunctions.o cpca.o deltacut.o edgeFilter.o edge_rebalancing.o edgeweights.o gradients.o graph_embedding.o largeVis.o propagate_labels.o spcov.o -L. -lpthread -lm -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR installing to /home/hornik/tmp/CRAN_special_gcc-san/conos.Rcheck/00LOCK-conos/00new/conos/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘getPca’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getPca’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getPca’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getOverdispersedGenes’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getOverdispersedGenes’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getOverdispersedGenes’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getOverdispersedGenes’ with signature ‘"Conos"’: no definition for class “Conos” in method for ‘getCellNames’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getCellNames’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getCellNames’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getCellNames’ with signature ‘"Conos"’: no definition for class “Conos” in method for ‘getGenes’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getGenes’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getGenes’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getGenes’ with signature ‘"Conos"’: no definition for class “Conos” in method for ‘edgeMat<-’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘edgeMat<-’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘edgeMat<-’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘edgeMat’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘edgeMat’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘edgeMat’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getCountMatrix’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getCountMatrix’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getCountMatrix’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getGeneExpression’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getGeneExpression’ with signature ‘"Conos"’: no definition for class “Conos” in method for ‘getGeneExpression’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getGeneExpression’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getRawCountMatrix’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getRawCountMatrix’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getRawCountMatrix’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getRawCountMatrix’ with signature ‘"Conos"’: no definition for class “Conos” in method for ‘getEmbedding’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getEmbedding’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getEmbedding’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getEmbedding’ with signature ‘"Conos"’: no definition for class “Conos” in method for ‘getClustering’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2” in method for ‘getClustering’ with signature ‘"seurat"’: no definition for class “seurat” in method for ‘getClustering’ with signature ‘"Seurat"’: no definition for class “Seurat” in method for ‘getClustering’ with signature ‘"Conos"’: no definition for class “Conos” Note: wrong number of arguments to '*' Note: wrong number of arguments to '*' Note: wrong number of arguments to 'exp' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (conos)