* using log directory 'd:/RCompile/CRANincoming/R-devel/confidenceCurves.Rcheck' * using R Under development (unstable) (2025-07-30 r88476 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'confidenceCurves/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'confidenceCurves' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Freda Werdiger ' New submission Possibly misspelled words in DESCRIPTION: makeConfidenceCurves (13:24) No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "options(devtools.desc.author=\"'Freda", family = "Werdiger'\"", role = c("aut", "cre"), email = "freda.werdiger@unimelb.edu.au") as necessary. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'confidenceCurves' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. Non-standard file/directory found at top level: 'test' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE makeConfidenceCurves : cdf: no visible global function definition for 'pnorm' makeConfidenceCurves : cd: no visible global function definition for 'dnorm' makeConfidenceCurves : cc: no visible global function definition for 'pnorm' makeConfidenceCurves: no visible global function definition for 'tail' makeConfidenceCurves : int_density: no visible global function definition for 'integrate' makeConfidenceCurves: no visible binding for global variable 'line' makeConfidenceCurves: no visible binding for global variable 'y' makeConfidenceCurves: no visible global function definition for 'qnorm' makeConfidenceCurves : dnorm_limit_sd: no visible global function definition for 'dnorm' makeConfidenceCurves: no visible global function definition for 'dnorm' makeConfidenceCurves : : no visible global function definition for 'dnorm' Undefined global functions or variables: dnorm integrate line pnorm qnorm tail y Consider adding importFrom("stats", "dnorm", "integrate", "line", "pnorm", "qnorm") importFrom("utils", "tail") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from Rd file 'testConfidenceCurves.Rd': testConfidenceCurves Code: function(num.ctrl = 50, num.trmt = 50, vary.ctrl = seq(16, 20, by = 2), vary.trmt = seq(26, 30, by = 2), vary.lmb = c(-0.05, -0.1), estimate.type = "odds ratio", return.plot = TRUE, save.plot = FALSE, directory = "./test") Docs: function(num.ctrl = 50, num.trmt = 50, vary.ctrl = seq(16, 20, by = 2), vary.trmt = seq(26, 30, by = 2), vary.lmb = c(-0.05, -0.1), estimate.type = "odds ratio", directory = "./test") Argument names in code not in docs: return.plot save.plot Mismatches in argument names: Position: 7 Code: return.plot Docs: directory * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [46s] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed testConfidenceCurves 40.9 0.31 41.53 * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking PDF version of manual ... [27s] OK * checking HTML version of manual ... OK * DONE Status: 1 WARNING, 4 NOTEs