* using log directory 'd:/RCompile/CRANincoming/R-devel/coneproj.Rcheck' * using R Under development (unstable) (2023-10-10 r85312 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'coneproj/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'coneproj' version '1.17' * checking CRAN incoming feasibility ... NOTE Maintainer: 'Xiyue Liao ' New maintainer: Xiyue Liao Old maintainer(s): Xiyue Liao Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'coneproj' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 12.2.0' * used C++ compiler: 'g++.exe (GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE constreg: no visible global function definition for 'qt' Undefined global functions or variables: qt Consider adding importFrom("stats", "qt") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in 'coneproj-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: constreg > ### Title: Constrained Parametric Regression > ### Aliases: constreg > ### Keywords: cone projection routines > > ### ** Examples > > # load the FEV data set > data(FEV) > > # extract the variables > y <- FEV$FEV > age <- FEV$age > height <- FEV$height > sex <- FEV$sex > smoke <- FEV$smoke > > # scale age and height > scale_age <- (age - min(age)) / (max(age) - min(age)) > scale_height <- (height - min(height)) / (max(height) - min(height)) > > # make xmat > xmat <- cbind(1, scale_age, scale_height, scale_age * scale_height, sex, smoke) > > # make the constraint matrix > amat <- matrix(0, 4, 6) > amat[1, 2] <- 1; amat[2, 2] <- 1; amat[2, 4] <- 1 > amat[3, 3] <- 1; amat[4, 3] <- 1; amat[4, 4] <- 1 > > # call constreg to get constrained coefficient estimates > ans1 <- constreg(y, xmat, amat) Error in qt((1 - level)/2, lower.tail = FALSE) : argument "df" is missing, with no default Calls: constreg -> qt Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 2 NOTEs