context("ICD-9 codes for the Elixhauser score are properly identified") test_that("Elixhauser code, ICD-9 codes", { this <- .maps[["elixhauser_icd9_quan"]] for (i in seq_along(this)) { cmb <- names(this)[i] for (j in seq_along(this[[i]])) { # For debugging: cat(this[[i]][j], "\n") x <- data.frame(id = 1, code = this[[i]][j]) test <- comorbidity(x = x, id = "id", code = "code", map = "elixhauser_icd9_quan", assign0 = FALSE) if (x$code %in% c("40201", "40211", "40291", "40401", "40411", "40491", "4255", "5710", "5711", "5712", "5713", "3341", "4168", "4169", "40301", "40311", "40391", "40402", "40412", "40492", "29654")) { # These codes here overlap two domains expect_equal(object = sum(test[, -1]), expected = 2) } else if (x$code %in% c("40403", "40413", "40493")) { # These codes here overlap three domains expect_equal(object = sum(test[, -1]), expected = 3) } else { expect_equal(object = sum(test[, -1]), expected = 1) } } } })