context("ICD-9 codes for the Charlson score are properly identified") test_that("Charlson code, ICD-9 codes", { this <- .maps[["charlson_icd9_quan"]] for (i in seq_along(this)) { cmb <- names(this)[i] for (j in seq_along(this[[i]])) { # For debugging: cat(this[[i]][j], "\n") x <- data.frame(id = 1, code = this[[i]][j]) test <- comorbidity(x = x, id = "id", code = "code", map = "charlson_icd9_quan", assign0 = FALSE) expect_equal(object = test[[cmb]], expected = 1) if (x$code %in% c("40403", "40413", "40493", "4373")) { # These codes here overlap different domains expect_equal(object = sum(test[, -1]), expected = 2) } else { expect_equal(object = sum(test[, -1]), expected = 1) } } } })