* using log directory 'd:/RCompile/CRANincoming/R-devel/comorbidPGS.Rcheck' * using R Under development (unstable) (2024-04-23 r86473 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'comorbidPGS/DESCRIPTION' ... OK * this is package 'comorbidPGS' version '0.3' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Vincent Pascat ' New submission Possibly misspelled words in DESCRIPTION: GRS (3:39, 8:50) PGS (3:27, 8:38, 11:18) PRS (3:35, 8:46) Phenotypes (2:52, 10:51) Polygenic (3:9, 8:20) ggplot (11:41) The Title field should be in title case. Current version is: 'Assessing the shared predisposition between Phenotypes using Polygenic Scores (PGS, or PRS/GRS for binary outcomes)' In title case that is: 'Assessing the Shared Predisposition Between Phenotypes using Polygenic Scores (PGS, or PRS/GRS for Binary Outcomes)' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'comorbidPGS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [13s] OK Running 'testthat.R' [13s] * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 NOTE