R Under development (unstable) (2025-07-17 r88424 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(commecometrics)
> 
> test_check("commecometrics")
Identifying overlapping species...
Spherical geometry (s2) switched off
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
although coordinates are longitude/latitude, st_intersects assumes that they
are planar
Spherical geometry (s2) switched on
Summarizing trait values for each point...
Filtering points with at least 3 species...
Retained 76 of 100 points (76%)
Optimal number of bins for the first trait summary metric (Scott's rule): 6
Optimal number of bins for the second trait summary metric (Scott's rule): 5
Used 5 of 30 bins (16.7%)
Prediction accuracy: 43.42% correct predictions.
Binning fossil points into trait space...
Loading required namespace: viridis
[ FAIL 0 | WARN 0 | SKIP 10 | PASS 7 ]

══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test-ecometric_model.R:4:3',
  'test-ecometric_model_qual.R:2:3', 'test-ecometric_space.R:2:3',
  'test-inspect_point_species.R:4:3', 'test-reconstruct_env.R:2:3',
  'test-reconstruct_env_qual.R:2:3', 'test-sensitivity_analysis.R:2:3',
  'test-sensitivity_analysis_qual.R:2:3',
  'test-summarize_traits_by_point.R:3:3',
  'test-summarize_traits_by_point.R:30:3'

[ FAIL 0 | WARN 0 | SKIP 10 | PASS 7 ]
> 
> proc.time()
   user  system elapsed 
  10.26    0.76   11.26