* installing *source* package 'colvR' ... ** this is package 'colvR' version '0.1.1' ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 14.3.0' using C++17 g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nlopt_wrapper.cpp -o nlopt_wrapper.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP.cpp -o optim_rank_ZIP.o In file included from optim_rank_ZIP.cpp:15: Elbo_gradBB.h: In function 'std::tuple, double, double, double, double, double, double, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)': Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ optim_rank_ZIP.cpp: In lambda function: optim_rank_ZIP.cpp:224:9: warning: unused variable 'q' [-Wunused-variable] 224 | int q = M.n_cols; | ^ optim_rank_ZIP.cpp:225:9: warning: unused variable 'd' [-Wunused-variable] 225 | int d = X.n_cols; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_M.cpp -o optim_rank_ZIP_M.o In file included from optim_rank_ZIP_M.cpp:15: Elbo_gradBB.h: In function 'std::tuple, double, double, double, double, double, double, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)': Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ optim_rank_ZIP_M.cpp: In lambda function: optim_rank_ZIP_M.cpp:123:9: warning: unused variable 'd' [-Wunused-variable] 123 | int d = X.n_cols; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_VE.cpp -o optim_rank_ZIP_VE.o In file included from optim_rank_ZIP_VE.cpp:15: Elbo_gradBB.h: In function 'std::tuple, double, double, double, double, double, double, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)': Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_alternate.cpp -o optim_rank_ZIP_alternate.o In file included from optim_rank_ZIP_alternate.cpp:15: Elbo_gradBB.h: In function 'std::tuple, double, double, double, double, double, double, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)': Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_q0.cpp -o optim_rank_ZIP_q0.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_cov.cpp -o optim_rank_cov.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_cov_inter.cpp -o optim_rank_cov_inter.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_zip_log.cpp -o optim_rank_zip_log.o In file included from optim_rank_zip_log.cpp:15: Elbo_gradBB.h: In function 'std::tuple, double, double, double, double, double, double, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat, arma::Mat > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)': Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c packing.cpp -o packing.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilsBB.cpp -o utilsBB.o utilsBB.cpp: In function 'arma::mat GradB(const arma::vec&, const arma::mat&, const arma::vec&, const arma::vec&, const arma::vec&)': utilsBB.cpp:132:7: warning: unused variable 'l' [-Wunused-variable] 132 | int l = vecY.size(); | ^ utilsBB.cpp: In function 'arma::mat GradC(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)': utilsBB.cpp:150:7: warning: unused variable 'n' [-Wunused-variable] 150 | int n = Y.n_rows; | ^ utilsBB.cpp:151:7: warning: unused variable 'p' [-Wunused-variable] 151 | int p = Y.n_cols; | ^ utilsBB.cpp: In function 'arma::mat GradM(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)': utilsBB.cpp:175:7: warning: unused variable 'n' [-Wunused-variable] 175 | int n = Y.n_rows; | ^ utilsBB.cpp:176:7: warning: unused variable 'p' [-Wunused-variable] 176 | int p = Y.n_cols; | ^ utilsBB.cpp: In function 'arma::mat GradS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)': utilsBB.cpp:200:7: warning: unused variable 'n' [-Wunused-variable] 200 | int n = A.n_rows; | ^ utilsBB.cpp:201:7: warning: unused variable 'p' [-Wunused-variable] 201 | int p = A.n_cols; | ^ g++ -shared -s -static-libgcc -o colvR.dll tmp.def RcppExports.o nlopt_wrapper.o optim_rank_ZIP.o optim_rank_ZIP_M.o optim_rank_ZIP_VE.o optim_rank_ZIP_alternate.o optim_rank_ZIP_q0.o optim_rank_cov.o optim_rank_cov_inter.o optim_rank_zip_log.o packing.o utilsBB.o -lnlopt -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-colvR/00new/colvR/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colvR)