* installing *source* package ‘colvR’ ... ** this is package ‘colvR’ version ‘0.1.0’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 21.1.6 (3)’ using C++17 clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nlopt_wrapper.cpp -o nlopt_wrapper.o nlopt_wrapper.cpp:148:24: warning: lambda capture 'check' is not used [-Wunused-lambda-capture] 148 | auto f_and_grad = [check](const double * x, double * grad) -> double { | ^~~~~ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_ZIP.cpp -o optim_rank_ZIP.o In file included from optim_rank_ZIP.cpp:15: ./Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ ./Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ ./Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ optim_rank_ZIP.cpp:224:9: warning: unused variable 'q' [-Wunused-variable] 224 | int q = M.n_cols; | ^ optim_rank_ZIP.cpp:225:9: warning: unused variable 'd' [-Wunused-variable] 225 | int d = X.n_cols; | ^ 5 warnings generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_ZIP_M.cpp -o optim_rank_ZIP_M.o In file included from optim_rank_ZIP_M.cpp:15: ./Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ ./Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ ./Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ optim_rank_ZIP_M.cpp:123:9: warning: unused variable 'd' [-Wunused-variable] 123 | int d = X.n_cols; | ^ 4 warnings generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_ZIP_VE.cpp -o optim_rank_ZIP_VE.o In file included from optim_rank_ZIP_VE.cpp:15: ./Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ ./Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ ./Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ 3 warnings generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_ZIP_alternate.cpp -o optim_rank_ZIP_alternate.o In file included from optim_rank_ZIP_alternate.cpp:15: ./Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ ./Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ ./Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ 3 warnings generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_ZIP_q0.cpp -o optim_rank_ZIP_q0.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_cov.cpp -o optim_rank_cov.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_cov_inter.cpp -o optim_rank_cov_inter.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optim_rank_zip_log.cpp -o optim_rank_zip_log.o In file included from optim_rank_zip_log.cpp:15: ./Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable] 107 | int n = Y.n_rows; | ^ ./Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable] 108 | int p = Y.n_cols; | ^ ./Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable] 109 | int q = M.n_cols; | ^ 3 warnings generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c packing.cpp -o packing.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utilsBB.cpp -o utilsBB.o utilsBB.cpp:132:7: warning: unused variable 'l' [-Wunused-variable] 132 | int l = vecY.size(); | ^ utilsBB.cpp:150:7: warning: unused variable 'n' [-Wunused-variable] 150 | int n = Y.n_rows; | ^ utilsBB.cpp:151:7: warning: unused variable 'p' [-Wunused-variable] 151 | int p = Y.n_cols; | ^ utilsBB.cpp:175:7: warning: unused variable 'n' [-Wunused-variable] 175 | int n = Y.n_rows; | ^ utilsBB.cpp:176:7: warning: unused variable 'p' [-Wunused-variable] 176 | int p = Y.n_cols; | ^ utilsBB.cpp:200:7: warning: unused variable 'n' [-Wunused-variable] 200 | int n = A.n_rows; | ^ utilsBB.cpp:201:7: warning: unused variable 'p' [-Wunused-variable] 201 | int p = A.n_cols; | ^ 7 warnings generated. clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o colvR.so RcppExports.o nlopt_wrapper.o optim_rank_ZIP.o optim_rank_ZIP_M.o optim_rank_ZIP_VE.o optim_rank_ZIP_alternate.o optim_rank_ZIP_q0.o optim_rank_cov.o optim_rank_cov_inter.o optim_rank_zip_log.o packing.o utilsBB.o -lnlopt -llapack -L/home/hornik/tmp/R-d-clang-21/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R-d-clang-21/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/colvR.Rcheck/00LOCK-colvR/00new/colvR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colvR)