* using log directory ‘/srv/hornik/tmp/CRAN_pretest/collett.Rcheck’
* using R Under development (unstable) (2025-01-06 r87534)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1)
    Debian flang-new version 19.1.6 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘collett/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘collett’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Mark Clements <mark.clements@ki.se>’

New submission

Possibly misspelled words in DESCRIPTION:
  Collett (4:22, 11:90)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  inst/extdata/A numerical illustration.dat
  inst/extdata/Bone marrow transplantation in the treatment of leukaemia.dat
  inst/extdata/Bone marrow transplantation.dat
  inst/extdata/Chemotherapy in ovarian cancer patients.dat
  inst/extdata/Chronic active hepatitis.dat
  inst/extdata/Chronic granulomatous disease.dat
  inst/extdata/Clinical trial of tamoxifen in breast cancer patients.dat
  inst/extdata/Comparison of two treatments for prostatic cancer.dat
  inst/extdata/Comparisons between kidney transplant centres.dat
  inst/extdata/Data from a cirrhosis study (baseline).dat
  inst/extdata/Data from a cirrhosis study (in counting process format).dat
  inst/extdata/Data from a cirrhosis study (lbr data).dat
  inst/extdata/Health evaluation and linkage to primary care.dat
  inst/extdata/Infection in patients on dialysis.dat
  inst/extdata/Patient outcome following bone marrow transplantation.dat
  inst/extdata/Prognosis for women with breast cancer.dat
  inst/extdata/Pulmonary metastasis.dat
  inst/extdata/Recurrence free survival in breast cancer patients.dat
  inst/extdata/Recurrence of an ulcer.dat
  inst/extdata/Recurrence of bladder cancer.dat
  inst/extdata/Recurrence of mammary tumours in female rats.dat
  inst/extdata/Survival following aortic valve replacement.dat
  inst/extdata/Survival following kidney transplantation.dat
  inst/extdata/Survival of black ducks.dat
  inst/extdata/Survival of laboratory mice.dat
  inst/extdata/Survival of liver transplant recipients.dat
  inst/extdata/Survival of multiple myeloma patients.dat
  inst/extdata/Survival of patients registered for a lung transplant.dat
  inst/extdata/Survival of patients with gastric cancer.dat
  inst/extdata/Survival times of patients with melanoma .dat
  inst/extdata/Time to death while waiting for a liver transplant.dat
  inst/extdata/Time to discontinuation of the use of an IUD.dat
  inst/extdata/Treatment of hypernephroma.dat
These are not fully portable file names.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘collett’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 1 NOTE