context("collapse and data.table integration") if(!is.null(attributes(identical(FALSE, TRUE)))) stop("OECD label issue") bmean <- base::mean # TODO: Check memory allocation, particularly where names<- and attr<- are used. # Also check attribute handling helpers with atomic and S4 objects !! expect_equal(1, 1) if(requireNamespace("data.table", quietly = TRUE) && requireNamespace("magrittr", quietly = TRUE)) { options(warn = -1L) library(data.table) library(magrittr) mtcDT <- qDT(roworderv(mtcars)) irisDT <- qDT(ss(iris, 1:100)) n <- 5L # copy <- identity # assignInNamespace("cedta.override", c(data.table:::cedta.override, "collapse"), "data.table") assignInNamespace("cedta.override", "collapse", "data.table") options(warn = 1L) test_that("creating columns and printing works after passing a data.table through collapse functions", { expect_true(is.data.table(mtcDT)) expect_true(is.data.table(irisDT)) expect_output(print(mtcDT)) expect_identical(names(mtcDT), names(mtcars)) expect_silent(mtcDT[, col := 1]) expect_output(print(mtcDT)) expect_silent(mtcDT[, col := NULL]) expect_identical(names(mtcDT), names(mtcars)) expect_output(print(mtcDT)) expect_silent(irisDT[, col := 1]) expect_silent(irisDT[, col := NULL]) # Statistical functions give warning dt <- fscale(copy(mtcDT)) expect_warning(dt[, new := 1]) expect_output(print(dt)) dt <- fsum(copy(mtcDT), TRA = 1) expect_warning(dt[, new := 1]) expect_output(print(dt)) dt <- fsum(copy(mtcDT), drop = FALSE) expect_warning(dt[, new := 1]) expect_output(print(dt)) for(i in 1:n) { if(!identical(copy, identity)) mtcDT <- qDT(mtcDT) expect_silent(mtcDT[, col := 1]) expect_silent(mtcDT[, col := NULL]) expect_identical(names(mtcDT), names(mtcars)) expect_identical(length(mtcDT), length(mtcars)) } # Other functions should work: for(i in 1:n) { dt <- fgroup_by(mtcDT, cyl) expect_identical(names(dt), names(mtcars)) # print(ltl(dt)) expect_silent(dt[, new := 1]) expect_output(print(dt)) # print(ltl(dt)) } for(i in 1:n) { dt2 <- fgroup_vars(dt) expect_silent(dt2[, new := 1]) expect_output(print(dt2)) } for(i in 1:n) { dt <- fungroup(fgroup_by(mtcDT, c(2,8:9))) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- funique(copy(mtcDT)) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- funique(copy(mtcDT), cols = "cyl") expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- fselect(copy(mtcDT), -mpg, -hp) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- fselect(copy(mtcDT), col2 = disp, wt:carb) expect_silent(dt[, new := 1]) expect_output(print(dt)) fselect(dt, col2, new) <- NULL expect_silent(dt[, ncol := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- fsubset(copy(mtcDT), cyl == 4) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- fsubset(copy(mtcDT), cyl == 4, bla = mpg, vs:am) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% smr(mean_mpg = fmean(mpg)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% smr(mean_mpg = bmean(mpg)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% gby(cyl) %>% smr(mean_mpg = fmean(mpg)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% gby(cyl) %>% smr(mean_mpg = bmean(mpg)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- ftransform(copy(mtcDT), bla = 1) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { settransform(dt, bla2 = 1) expect_silent(dt[, new2 := 1]) expect_output(print(dt)) } for(i in 1:n) { ftransform(dt) <- list(sds = mtcDT$qsec) expect_silent(dt[, new3 := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- fcompute(copy(mtcDT), bla = mpg + cyl, df = 1, keep = 7:10) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- roworderv(copy(mtcDT)) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- roworder(copy(mtcDT), cyl, -vs) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- roworderv(copy(mtcDT), cols = 1:2) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- colorderv(copy(mtcDT)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- colorder(copy(mtcDT), vs, cyl, am) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- frename(copy(mtcDT), carb = bla, mpg = x) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- frename(copy(mtcDT), toupper) expect_silent(dt[, new := 1]) expect_output(print(dt)) setrename(dt, MPG = ABC, new = NEW) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- get_vars(copy(irisDT), 1:3) expect_silent(dt[, new := 1]) expect_output(print(dt)) get_vars(dt, 1) <- irisDT$Species expect_silent(dt[, new2 := 1]) expect_output(print(dt)) } for(i in 1:n) { get_vars(dt, 1) <- NULL expect_silent(dt[, new3 := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- get_vars(irisDT, 1:3) %>% add_vars(gv(irisDT, 4)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { add_vars(dt) <- list(Sp = irisDT$Species) expect_silent(dt[, new2 := 1]) expect_output(print(dt)) } wldDT <- qDT(wlddev) for(i in .c(num_vars, nv, cat_vars, char_vars, fact_vars, logi_vars, date_vars)) { # print(i) # Iris data FUN <- match.fun(i) dt <- FUN(irisDT) expect_identical(names(dt), FUN(iris, "names")) expect_silent(dt[, new := 1]) expect_output(print(dt)) rm(dt) dt <- irisDT eval(substitute(FUN(dt) <- NULL, list(FUN = as.name(i)))) expect_silent(dt[, new := 1]) expect_output(print(dt)) rm(dt) # wlddev data dt <- FUN(wldDT) expect_identical(names(dt), FUN(wlddev, "names")) expect_silent(dt[, new := 1]) expect_output(print(dt)) rm(dt) dt <- wldDT eval(substitute(FUN(dt) <- NULL, list(FUN = as.name(i)))) expect_silent(dt[, new := 1]) expect_output(print(dt)) rm(dt) } for(i in 1:n) { dt <- relabel(copy(wldDT), toupper) expect_silent(dt[, new := 1]) expect_output(print(dt)) setrelabel(dt, PCGDP = "GRP per cap", LIFEEX = "LE") expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- qDT(qTBL(qDF(qDT(GGDC10S)))) expect_identical(names(dt), names(GGDC10S)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- fdroplevels(copy(wldDT)) expect_identical(names(dt), names(wlddev)) expect_true(!anyNA(vlabels(dt))) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { m <- qM(mtcars) dt <- qDT(m) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } expect_output(print(mtcDT[, qDT(pwcor(.SD)), by = cyl, .SDcols = c("mpg", "hp", "carb")])) expect_output(print(melt(qDT(GGDC10S)[, qDT(pwcor(.SD)), by = .(Variable, Country), .SDcols = 6:15], 1:2))) for(i in 1:n) { dt <- as_character_factor(wldDT) expect_identical(names(dt), names(wlddev)) expect_true(!anyNA(vlabels(dt))) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- as_character_factor(wldDT, keep.attr = FALSE) expect_identical(names(dt), names(wlddev)) expect_true(anyNA(vlabels(dt))) expect_silent(dt[, new := 1]) expect_output(print(dt)) } options(warn = -1L) for(i in 1:n) { dt <- as_numeric_factor(wldDT) expect_identical(names(dt), names(wlddev)) expect_true(!anyNA(vlabels(dt))) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- as_numeric_factor(wldDT, keep.attr = FALSE) expect_identical(names(dt), names(wlddev)) expect_true(anyNA(vlabels(dt))) expect_silent(dt[, new := 1]) expect_output(print(dt)) } options(warn = 1L) for(i in 1:n) { dt <- collap(wldDT, ~ iso3c) expect_identical(names(dt), names(wlddev)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- collapv(wldDT, 1) expect_identical(names(dt), names(wlddev)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- collapg(gby(wldDT, 1)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- dapply(copy(mtcDT), log) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- dapply(copy(mtcDT), log, return = "data.frame") expect_identical(names(dt), names(mtcars)) expect_error(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { l <- rsplit(copy(mtcDT), ~cyl) expect_silent(for(i in seq_along(l)) l[[i]][, new := 1]) expect_output(print(l)) expect_output(print(l[[1]])) } for(i in 1:n) { dt <- unlist2d(l, DT = TRUE) expect_silent(dt[, new45 := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- na_omit(copy(mtcDT), cols = 1:2) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- na_omit(copy(mtcDT)) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- na_insert(copy(mtcDT)) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(wldDT) vlabels(wldDT) <- NULL expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% add_stub("B") expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% add_stub("B") %>% rm_stub("B") expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% setRownames expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- copy(mtcDT) %>% frename(toupper) %>% setColnames(names(mtcars)) expect_identical(names(dt), names(mtcars)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- replace_NA(copy(wldDT), cols = is.numeric) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- replace_NA(copy(mtcDT), set = TRUE, cols = is.numeric) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- replace_Inf(copy(wldDT)) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- replace_outliers(copy(wldDT), 3) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- recode_num(copy(wldDT), `1` = 2) expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- recode_char(copy(wldDT), Uganda = "UGA") expect_silent(dt[, new := 1]) expect_output(print(dt)) } for(i in 1:n) { dt <- pad(copy(mtcDT), 1:3) expect_silent(dt[, new := 1]) expect_output(print(dt)) } }) }