context("fscale / STD") bsum <- base::sum # TODO: Still a few uneccessary infinity values generated with weights when the sd is null. search replace_Inf to find them. # rm(list = ls()) set.seed(101) x <- rnorm(100) w <- abs(100*rnorm(100)) wdat <- abs(100*rnorm(32)) xNA <- x wNA <- w wdatNA <- wdat xNA[sample.int(100,20)] <- NA wNA[sample.int(100,20)] <- NA wdatNA[sample.int(32, 5)] <- NA f <- as.factor(rep(1:10, each = 10)) g <- as.factor(rep(c(1,2,2,3,3,3,4,4,4,4,5,5,5,5,5,7,7,7,7,7,7,7,10,10,10,10,10,10,10,10,10,10))) mtcNA <- na_insert(mtcars) mtcNA[1,1] <- NA # single group NA !! m <- as.matrix(mtcars) mNA <- as.matrix(mtcNA) mNAc <- mNA storage.mode(mNAc) <- "character" bscale <- function(x, na.rm = FALSE, mean = 0, sd = 1) { if(na.rm || !anyNA(x)) `attributes<-`(drop(base::scale(x)), NULL) * sd + mean else rep(NA_real_, length(x)) } # NOTE: This is what fscale currently does: If missing values, compute weighted mean and sd on available obs, and scale x using it. but don't insert additional missing values in x for missing weights .. wbscale <- function(x, w, na.rm = FALSE, mean = 0, sd = 1) { if(na.rm) { x2 <- x cc <- complete.cases(x, w) x <- x[cc] # if(length(x) < 2L) return(rep(NA_real_, length(x2))) # wbscale(NA, 1, na.rm = TRUE) gives length 0 if(length(x) < 2L || all(x[1L] == x[-1L])) return(rep(NA_real_, length(x2))) w <- w[cc] } else { if(length(x) < 2L) return(NA_real_) ck <- all(x[1L] == x[-1L]) if(is.na(ck) || all(ck)) return(rep(NA_real_, length(x))) } sw <- bsum(w) wm <- bsum(w * x) / sw xdm <- x - wm wsd <- sqrt(bsum(w * xdm^2) / (sw - 1)) / sd if(!na.rm) return(xdm / wsd + mean) return((x2 - wm) / wsd + mean) } test_that("fscale performs like bscale", { expect_equal(fscale(NA), as.double(bscale(NA))) expect_equal(fscale(NA, na.rm = FALSE), as.double(bscale(NA))) expect_equal(fscale(1), bscale(1, na.rm = TRUE)) expect_equal(fscale(1:3), bscale(1:3, na.rm = TRUE)) expect_equal(fscale(-1:1), bscale(-1:1, na.rm = TRUE)) expect_equal(fscale(1, na.rm = FALSE), bscale(1)) expect_equal(fscale(1:3, na.rm = FALSE), bscale(1:3)) expect_equal(fscale(-1:1, na.rm = FALSE), bscale(-1:1)) expect_equal(fscale(x), bscale(x, na.rm = TRUE)) expect_equal(fscale(x, na.rm = FALSE), bscale(x)) expect_equal(fscale(xNA, na.rm = FALSE), bscale(xNA)) expect_equal(fscale(xNA), bscale(xNA, na.rm = TRUE)) expect_equal(qM(fscale(mtcars)), fscale(m)) expect_equal(fscale(m), dapply(m, bscale, na.rm = TRUE)) expect_equal(fscale(m, na.rm = FALSE), dapply(m, bscale)) expect_equal(fscale(mNA, na.rm = FALSE), dapply(mNA, bscale)) expect_equal(fscale(mNA), dapply(mNA, bscale, na.rm = TRUE)) expect_equal(fscale(mtcars), dapply(mtcars, bscale, na.rm = TRUE)) expect_equal(fscale(mtcars, na.rm = FALSE), dapply(mtcars, bscale)) expect_equal(fscale(mtcNA, na.rm = FALSE), dapply(mtcNA, bscale)) expect_equal(fscale(mtcNA), dapply(mtcNA, bscale, na.rm = TRUE)) expect_equal(fscale(x, f), BY(x, f, bscale, na.rm = TRUE, use.g.names = FALSE)) expect_equal(fscale(x, f, na.rm = FALSE), BY(x, f, bscale, use.g.names = FALSE)) expect_equal(fscale(xNA, f, na.rm = FALSE), BY(xNA, f, bscale, use.g.names = FALSE)) expect_equal(fscale(xNA, f), BY(xNA, f, bscale, na.rm = TRUE, use.g.names = FALSE)) expect_equal(fscale(m, g), BY(m, g, bscale, na.rm = TRUE, use.g.names = FALSE)) expect_equal(fscale(m, g, na.rm = FALSE), BY(m, g, bscale, use.g.names = FALSE)) expect_equal(fscale(mNA, g, na.rm = FALSE), BY(mNA, g, bscale, use.g.names = FALSE)) expect_equal(fscale(mNA, g), BY(mNA, g, bscale, na.rm = TRUE, use.g.names = FALSE)) expect_equal(fscale(mtcars, g), BY(mtcars, g, bscale, na.rm = TRUE, use.g.names = FALSE)) expect_equal(fscale(mtcars, g, na.rm = FALSE), BY(mtcars, g, bscale, use.g.names = FALSE)) expect_equal(fscale(mtcNA, g, na.rm = FALSE), BY(mtcNA, g, bscale, use.g.names = FALSE)) expect_equal(fscale(mtcNA, g), BY(mtcNA, g, bscale, na.rm = TRUE, use.g.names = FALSE)) }) su <- function(x) if(is.null(dim(x))) `attributes<-`(qsu.default(x)[2:3], NULL) else `attributes<-`(qsu(x)[,2:3], NULL) suby <- function(x, f) if(is.null(dim(x))) `attributes<-`(qsu.default(x, f)[, 2:3], NULL) else `attributes<-`(qsu(x, f)[,2:3,], NULL) miss <- unname(rep(ifelse(dapply(mNA, anyNA), NA_real_, 0), 2)) test_that("Unweighted customized scaling works as intended", { expect_equal(su(fscale(x, mean = 5.1, sd = 3.9)), c(5.1, 3.9)) expect_equal(su(fscale(x, mean = 5.1, sd = 3.9, na.rm = FALSE)), c(5.1, 3.9)) expect_equal(su(fscale(xNA, mean = 5.1, sd = 3.9, na.rm = FALSE)), c(NaN, NA)) expect_equal(su(fscale(xNA, mean = 5.1, sd = 3.9)), c(5.1, 3.9)) expect_equal(qM(fscale(mtcars, mean = 5.1, sd = 3.9)), fscale(m, mean = 5.1, sd = 3.9)) expect_equal(su(fscale(m, mean = 5.1, sd = 3.9)), rep(c(5.1, 3.9), c(11, 11))) expect_equal(su(fscale(m, mean = 5.1, sd = 3.9, na.rm = FALSE)), rep(c(5.1, 3.9), c(11, 11))) expect_equal(su(fscale(mNA, mean = 5.1, sd = 3.9, na.rm = FALSE)), rep(c(5.1, 3.9), c(11, 11))+miss) expect_equal(su(fscale(mNA, mean = 5.1, sd = 3.9)), rep(c(5.1, 3.9), c(11, 11))) expect_equal(suby(fscale(x, f, mean = 5.1, sd = 3.9), f), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) expect_equal(suby(fscale(x, f, mean = 5.1, sd = 3.9, na.rm = FALSE), f), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) expect_equal(suby(fscale(xNA, f, mean = 5.1, sd = 3.9), f), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) }) test_that("Unweighted customized scaling works like bscale (defined above)", { expect_equal(fscale(x, mean = 5.1, sd = 3.9), bscale(x, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, mean = 5.1, sd = 3.9, na.rm = FALSE), bscale(x, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, mean = 5.1, sd = 3.9, na.rm = FALSE), bscale(xNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, mean = 5.1, sd = 3.9), bscale(xNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(qM(fscale(mtcars, mean = 5.1, sd = 3.9)), fscale(m, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, mean = 5.1, sd = 3.9), dapply(m, bscale, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, mean = 5.1, sd = 3.9, na.rm = FALSE), dapply(m, bscale, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, mean = 5.1, sd = 3.9, na.rm = FALSE), dapply(mNA, bscale, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, mean = 5.1, sd = 3.9), dapply(mNA, bscale, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, f, mean = 5.1, sd = 3.9), BY(x, f, bscale, na.rm = TRUE, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, f, mean = 5.1, sd = 3.9, na.rm = FALSE), BY(x, f, bscale, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, f, mean = 5.1, sd = 3.9, na.rm = FALSE), BY(xNA, f, bscale, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, f, mean = 5.1, sd = 3.9), BY(xNA, f, bscale, na.rm = TRUE, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, g, mean = 5.1, sd = 3.9), BY(m, g, bscale, na.rm = TRUE, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, g, mean = 5.1, sd = 3.9, na.rm = FALSE), BY(m, g, bscale, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, g, mean = 5.1, sd = 3.9, na.rm = FALSE), BY(mNA, g, bscale, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, g, mean = 5.1, sd = 3.9), BY(mNA, g, bscale, na.rm = TRUE, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, g, mean = 5.1, sd = 3.9), BY(mtcars, g, bscale, na.rm = TRUE, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, g, mean = 5.1, sd = 3.9, na.rm = FALSE), BY(mtcars, g, bscale, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, g, mean = 5.1, sd = 3.9, na.rm = FALSE), BY(mtcNA, g, bscale, use.g.names = FALSE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, g, mean = 5.1, sd = 3.9), BY(mtcNA, g, bscale, na.rm = TRUE, use.g.names = FALSE, mean = 5.1, sd = 3.9)) }) test_that("Unweighted customized scaling special cases perform as intended ", { # No mean / centering expect_equal(fscale(x, mean = FALSE, sd = 3.9), bscale(x, na.rm = TRUE, mean = fmean(x), sd = 3.9)) expect_equal(fscale(x, mean = FALSE, sd = 3.9, na.rm = FALSE), bscale(x, mean = fmean(x), sd = 3.9)) expect_equal(fscale(xNA, mean = FALSE, sd = 3.9, na.rm = FALSE), bscale(xNA, mean = fmean(xNA), sd = 3.9)) expect_equal(fscale(xNA, mean = FALSE, sd = 3.9), bscale(xNA, na.rm = TRUE, mean = fmean(xNA), sd = 3.9)) expect_equal(qM(fscale(mtcars, mean = FALSE, sd = 3.9)), fscale(m, mean = FALSE, sd = 3.9)) expect_equal(fmean(fscale(mtcars, mean = FALSE, sd = 3.9)), fmean(mtcars)) expect_equal(unname(fsd(fscale(mtcars, mean = FALSE, sd = 3.9))), rep(3.9, length(mtcars))) expect_equal(fscale(x, f, mean = FALSE), BY(x, f, bscale, na.rm = TRUE, use.g.names = FALSE) + B(x, f)) expect_equal(fscale(x, f, na.rm = FALSE, mean = FALSE), BY(x, f, bscale, use.g.names = FALSE) + B(x, f)) expect_equal(fscale(xNA, f, na.rm = FALSE, mean = FALSE), BY(xNA, f, bscale, use.g.names = FALSE) + B(xNA, f)) expect_equal(fscale(xNA, f, mean = FALSE), BY(xNA, f, bscale, na.rm = TRUE, use.g.names = FALSE) + B(xNA, f)) expect_equal(fscale(m, g, mean = FALSE), BY(m, g, bscale, na.rm = TRUE, use.g.names = FALSE) + B(m, g)) expect_equal(fscale(m, g, na.rm = FALSE, mean = FALSE), BY(m, g, bscale, use.g.names = FALSE) + B(m, g)) expect_equal(fscale(mNA, g, na.rm = FALSE, mean = FALSE), BY(mNA, g, bscale, use.g.names = FALSE) + B(mNA, g)) expect_equal(fscale(mNA, g, mean = FALSE), BY(mNA, g, bscale, na.rm = TRUE, use.g.names = FALSE) + B(mNA, g)) expect_equal(fscale(mtcars, g, mean = FALSE), BY(mtcars, g, bscale, na.rm = TRUE, use.g.names = FALSE) + B(mtcars, g)) expect_equal(fscale(mtcars, g, na.rm = FALSE, mean = FALSE), BY(mtcars, g, bscale, use.g.names = FALSE) + B(mtcars, g)) expect_equal(fscale(mtcNA, g, na.rm = FALSE, mean = FALSE), BY(mtcNA, g, bscale, use.g.names = FALSE) + B(mtcNA, g)) expect_equal(fscale(mtcNA, g, mean = FALSE), BY(mtcNA, g, bscale, na.rm = TRUE, use.g.names = FALSE)+ B(mtcNA, g)) # Centering on overall mean expect_equal(fscale(x, f, mean = "overall.mean"), BY(x, f, bscale, na.rm = TRUE, use.g.names = FALSE) + ave(x)) expect_equal(fscale(x, f, na.rm = FALSE, mean = "overall.mean"), BY(x, f, bscale, use.g.names = FALSE) + ave(x)) # expect_equal(fscale(xNA, f, na.rm = FALSE, mean = "overall.mean"), BY(xNA, f, bscale, use.g.names = FALSE) + B(xNA)) # Not the same !! expect_equal(fscale(xNA, f, mean = "overall.mean"), BY(xNA, f, bscale, na.rm = TRUE, use.g.names = FALSE) + B(xNA)) expect_equal(fscale(m, g, mean = "overall.mean"), BY(m, g, bscale, na.rm = TRUE, use.g.names = FALSE) + B(m)) expect_equal(fscale(m, g, na.rm = FALSE, mean = "overall.mean"), BY(m, g, bscale, use.g.names = FALSE) + B(m)) # expect_equal(fscale(mNA, g, na.rm = FALSE, mean = "overall.mean"), BY(mNA, g, bscale, use.g.names = FALSE) + B(mNA)) expect_equal(fscale(mNA, g, mean = "overall.mean"), BY(mNA, g, bscale, na.rm = TRUE, use.g.names = FALSE) + B(mNA)) expect_equal(fscale(mtcars, g, mean = "overall.mean"), BY(mtcars, g, bscale, na.rm = TRUE, use.g.names = FALSE) + B(mtcars)) expect_equal(fscale(mtcars, g, na.rm = FALSE, mean = "overall.mean"), BY(mtcars, g, bscale, use.g.names = FALSE) + B(mtcars)) # expect_equal(fscale(mtcNA, g, na.rm = FALSE, mean = "overall.mean"), BY(mtcNA, g, bscale, use.g.names = FALSE) + B(mtcNA)) expect_equal(fscale(mtcNA, g, mean = "overall.mean"), BY(mtcNA, g, bscale, na.rm = TRUE, use.g.names = FALSE)+ B(mtcNA)) # Scaling by within-sd expect_equal(fscale(x, f, sd = "within.sd"), BY(x, f, bscale, na.rm = TRUE, use.g.names = FALSE) * fsd(W(x, f))) expect_equal(fscale(x, f, na.rm = FALSE, sd = "within.sd"), BY(x, f, bscale, use.g.names = FALSE) * fsd(W(x, f))) # expect_equal(fscale(xNA, f, na.rm = FALSE, sd = "within.sd"), BY(xNA, f, bscale, use.g.names = FALSE) * fsd(W(xNA, f))) # Not the same !! expect_equal(fscale(xNA, f, sd = "within.sd"), BY(xNA, f, bscale, na.rm = TRUE, use.g.names = FALSE) * fsd(W(xNA, f))) expect_equal(fscale(m, g, sd = "within.sd"), BY(m, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(m,fsd(W(m, g)),1L)) expect_equal(fscale(m, g, na.rm = FALSE, sd = "within.sd"), BY(m, g, bscale, use.g.names = FALSE) * TRA(m,fsd(W(m, g)),1L)) # expect_equal(fscale(mNA, g, na.rm = FALSE, sd = "within.sd"), BY(mNA, g, bscale, use.g.names = FALSE) * TRA(mNA,fsd(W(mNA, g)),1L)) expect_equal(fscale(mNA, g, sd = "within.sd"), BY(mNA, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(mNA,fsd(W(mNA, g)),1L)) expect_equal(fscale(mtcars, g, sd = "within.sd"), BY(mtcars, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(mtcars,fsd(W(mtcars, g)),1L)) expect_equal(fscale(mtcars, g, na.rm = FALSE, sd = "within.sd"), BY(mtcars, g, bscale, use.g.names = FALSE) * TRA(mtcars,fsd(W(mtcars, g)),1L)) # expect_equal(fscale(mtcNA, g, na.rm = FALSE, sd = "within.sd"), BY(mtcNA, g, bscale, use.g.names = FALSE) * TRA(mtcNA,fsd(W(mtcNA, g)),1L)) expect_equal(fscale(mtcNA, g, sd = "within.sd"), BY(mtcNA, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(mtcNA,fsd(W(mtcNA, g)),1L)) # Centering on overall mean and scaling by within-sd expect_equal(fscale(x, f, mean = "overall.mean", sd = "within.sd"), BY(x, f, bscale, na.rm = TRUE, use.g.names = FALSE) * fsd(W(x, f)) + ave(x)) expect_equal(fscale(x, f, na.rm = FALSE, mean = "overall.mean", sd = "within.sd"), BY(x, f, bscale, use.g.names = FALSE) * fsd(W(x, f)) + ave(x)) # expect_equal(fscale(xNA, f, na.rm = FALSE, mean = "overall.mean", sd = "within.sd"), BY(xNA, f, bscale, use.g.names = FALSE) * fsd(W(xNA, f)) + B(xNA)) # Not the same !! expect_equal(fscale(xNA, f, mean = "overall.mean", sd = "within.sd"), BY(xNA, f, bscale, na.rm = TRUE, use.g.names = FALSE) * fsd(W(xNA, f)) + B(xNA)) expect_equal(fscale(m, g, mean = "overall.mean", sd = "within.sd"), BY(m, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(m,fsd(W(m, g)),1L) + B(m)) expect_equal(fscale(m, g, na.rm = FALSE, mean = "overall.mean", sd = "within.sd"), BY(m, g, bscale, use.g.names = FALSE) * TRA(m,fsd(W(m, g)),1L) + B(m)) # expect_equal(fscale(mNA, g, na.rm = FALSE, mean = "overall.mean", sd = "within.sd"), BY(mNA, g, bscale, use.g.names = FALSE) * TRA(mNA,fsd(W(mNA, g)),1L) + B(mNA)) expect_equal(fscale(mNA, g, mean = "overall.mean", sd = "within.sd"), BY(mNA, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(mNA,fsd(W(mNA, g)),1L) + B(mNA)) expect_equal(fscale(mtcars, g, mean = "overall.mean", sd = "within.sd"), BY(mtcars, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(mtcars,fsd(W(mtcars, g)),1L) + B(mtcars)) expect_equal(fscale(mtcars, g, na.rm = FALSE, mean = "overall.mean", sd = "within.sd"), BY(mtcars, g, bscale, use.g.names = FALSE) * TRA(mtcars,fsd(W(mtcars, g)),1L) + B(mtcars)) # expect_equal(fscale(mtcNA, g, na.rm = FALSE, mean = "overall.mean", sd = "within.sd"), BY(mtcNA, g, bscale, use.g.names = FALSE) * TRA(mtcNA,fsd(W(mtcNA, g)),1L) + B(mtcNA)) expect_equal(fscale(mtcNA, g, mean = "overall.mean", sd = "within.sd"), BY(mtcNA, g, bscale, na.rm = TRUE, use.g.names = FALSE) * TRA(mtcNA,fsd(W(mtcNA, g)),1L) + B(mtcNA)) }) # Still test weighted special cases ... test_that("fscale performs like fscale with unit weights", { expect_equal(fscale(NA), fscale(NA, w = 1)) expect_equal(fscale(NA, na.rm = FALSE), fscale(NA, w = 1, na.rm = FALSE)) expect_equal(fscale(1), fscale(1, w = 1)) expect_equal(fscale(1:3), fscale(1:3, w = rep(1,3))) expect_equal(fscale(-1:1), fscale(-1:1, w = rep(1,3))) expect_equal(fscale(1, na.rm = FALSE), fscale(1, w = 1, na.rm = FALSE)) expect_equal(fscale(1:3, na.rm = FALSE), fscale(1:3, w = rep(1, 3), na.rm = FALSE)) expect_equal(fscale(-1:1, na.rm = FALSE), fscale(-1:1, w = rep(1, 3), na.rm = FALSE)) expect_equal(fscale(x), fscale(x, w = rep(1,100))) expect_equal(fscale(x, na.rm = FALSE), fscale(x, w = rep(1, 100), na.rm = FALSE)) expect_equal(fscale(xNA, na.rm = FALSE), fscale(xNA, w = rep(1, 100), na.rm = FALSE)) expect_equal(fscale(xNA), fscale(xNA, w = rep(1, 100))) expect_equal(fscale(m), fscale(m, w = rep(1, 32))) expect_equal(fscale(m, na.rm = FALSE), fscale(m, w = rep(1, 32), na.rm = FALSE)) expect_equal(fscale(mNA, na.rm = FALSE), fscale(mNA, w = rep(1, 32), na.rm = FALSE)) expect_equal(fscale(mNA), fscale(mNA, w = rep(1, 32))) expect_equal(fscale(mtcars), fscale(mtcars, w = rep(1, 32))) expect_equal(fscale(mtcars, na.rm = FALSE), fscale(mtcars, w = rep(1, 32), na.rm = FALSE)) expect_equal(fscale(mtcNA, na.rm = FALSE), fscale(mtcNA, w = rep(1, 32), na.rm = FALSE)) expect_equal(fscale(mtcNA), fscale(mtcNA, w = rep(1, 32))) expect_equal(fscale(x, f), fscale(x, f, rep(1,100))) expect_equal(fscale(x, f, na.rm = FALSE), fscale(x, f, rep(1,100), na.rm = FALSE)) expect_equal(fscale(xNA, f, na.rm = FALSE), fscale(xNA, f, rep(1,100), na.rm = FALSE)) expect_equal(fscale(xNA, f), fscale(xNA, f, rep(1,100))) expect_equal(fscale(m, g), fscale(m, g, rep(1,32))) expect_equal(fscale(m, g, na.rm = FALSE), fscale(m, g, rep(1,32), na.rm = FALSE)) expect_equal(fscale(mNA, g, na.rm = FALSE), fscale(mNA, g, rep(1,32), na.rm = FALSE)) expect_equal(fscale(mNA, g), fscale(mNA, g, rep(1,32))) expect_equal(fscale(mtcars, g), fscale(mtcars, g, rep(1,32))) expect_equal(fscale(mtcars, g, na.rm = FALSE), fscale(mtcars, g, rep(1,32), na.rm = FALSE)) expect_equal(fscale(mtcNA, g, na.rm = FALSE), fscale(mtcNA, g, rep(1,32), na.rm = FALSE)) expect_equal(fscale(mtcNA, g), fscale(mtcNA, g, rep(1,32))) }) test_that("fscale with weights performs like wbscale (defined above)", { # complete weights expect_equal(fscale(NA, w = 1), wbscale(NA, 1)) expect_equal(fscale(NA, w = 1, na.rm = FALSE), wbscale(NA, 1)) expect_equal(fscale(1, w = 1), wbscale(1, w = 1)) expect_equal(fscale(1:3, w = 1:3), wbscale(1:3, 1:3)) expect_equal(fscale(-1:1, w = 1:3), wbscale(-1:1, 1:3)) expect_equal(fscale(1, w = 1, na.rm = FALSE), wbscale(1, 1)) expect_equal(fscale(1:3, w = c(0.99,3454,1.111), na.rm = FALSE), wbscale(1:3, c(0.99,3454,1.111))) expect_equal(fscale(-1:1, w = 1:3, na.rm = FALSE), wbscale(-1:1, 1:3)) expect_equal(fscale(x, w = w), wbscale(x, w)) expect_equal(fscale(x, w = w, na.rm = FALSE), wbscale(x, w)) expect_equal(fscale(xNA, w = w, na.rm = FALSE), wbscale(xNA, w)) expect_equal(fscale(xNA, w = w), wbscale(xNA, w, na.rm = TRUE)) expect_equal(qM(fscale(mtcars, w = wdat)), fscale(m, w = wdat)) expect_equal(fscale(m, w = wdat), dapply(m, wbscale, wdat, na.rm = TRUE)) expect_equal(fscale(m, w = wdat, na.rm = FALSE), dapply(m, wbscale, wdat)) expect_equal(fscale(mNA, w = wdat, na.rm = FALSE), dapply(mNA, wbscale, wdat)) expect_equal(fscale(mNA, w = wdat), dapply(mNA, wbscale, wdat, na.rm = TRUE)) expect_equal(fscale(mtcars, w = wdat), dapply(mtcars, wbscale, wdat, na.rm = TRUE)) expect_equal(fscale(mtcars, w = wdat, na.rm = FALSE), dapply(mtcars, wbscale, wdat)) expect_equal(fscale(mtcNA, w = wdat, na.rm = FALSE), dapply(mtcNA, wbscale, wdat)) expect_equal(fscale(mtcNA, w = wdat), dapply(mtcNA, wbscale, wdat, na.rm = TRUE)) expect_equal(fscale(x, f, w), BY(x, f, wbscale, w)) expect_equal(fscale(x, f, w, na.rm = FALSE), BY(x, f, wbscale, w)) expect_equal(fscale(xNA, f, w, na.rm = FALSE), BY(xNA, f, wbscale, w)) expect_equal(fscale(xNA, f, w), BY(xNA, f, wbscale, w, na.rm = TRUE)) expect_equal(fscale(m, g, wdat), BY(m, g, wbscale, wdat, na.rm = TRUE)) expect_equal(fscale(m, g, wdat, na.rm = FALSE), BY(m, g, wbscale, wdat)) expect_equal(fscale(mNA, g, wdat, na.rm = FALSE), BY(mNA, g, wbscale, wdat)) expect_equal(fscale(mNA, g, wdat), BY(mNA, g, wbscale, wdat, na.rm = TRUE)) expect_equal(fscale(mtcars, g, wdat), BY(mtcars, g, wbscale, wdat)) expect_equal(fscale(mtcars, g, wdat, na.rm = FALSE), BY(mtcars, g, wbscale, wdat)) expect_equal(fscale(mtcNA, g, wdat, na.rm = FALSE), BY(mtcNA, g, wbscale, wdat)) expect_equal(fscale(mtcNA, g, wdat), BY(mtcNA, g, wbscale, wdat, na.rm = TRUE)) # missing weights expect_equal(fscale(NA, w = NA), wbscale(NA, NA)) expect_equal(fscale(NA, w = NA, na.rm = FALSE), wbscale(NA, NA)) expect_equal(fscale(1, w = NA), wbscale(1, w = NA)) expect_equal(fscale(1:3, w = c(NA,1:2)), wbscale(1:3, c(NA,1:2), na.rm = TRUE)) expect_equal(fscale(-1:1, w = c(NA,1:2)), wbscale(-1:1, c(NA,1:2), na.rm = TRUE)) expect_equal(fscale(1, w = NA, na.rm = FALSE), wbscale(1, NA)) expect_equal(fscale(1:3, w = c(NA,1:2), na.rm = FALSE), wbscale(1:3, c(NA,1:2))) expect_equal(fscale(-1:1, w = c(NA,1:2), na.rm = FALSE), wbscale(-1:1, c(NA,1:2))) expect_equal(fscale(x, w = wNA), wbscale(x, wNA, na.rm = TRUE)) expect_equal(fscale(x, w = wNA, na.rm = FALSE), wbscale(x, wNA)) expect_equal(fscale(xNA, w = wNA, na.rm = FALSE), wbscale(xNA, wNA)) expect_equal(fscale(xNA, w = wNA), wbscale(xNA, wNA, na.rm = TRUE)) expect_equal(qM(fscale(mtcars, w = wdatNA)), fscale(m, w = wdatNA)) expect_equal(fscale(m, w = wdatNA), dapply(m, wbscale, wdatNA, na.rm = TRUE)) expect_equal(fscale(m, w = wdatNA, na.rm = FALSE), dapply(m, wbscale, wdatNA)) expect_equal(fscale(mNA, w = wdatNA, na.rm = FALSE), dapply(mNA, wbscale, wdatNA)) expect_equal(fscale(mNA, w = wdatNA), dapply(mNA, wbscale, wdatNA, na.rm = TRUE)) expect_equal(fscale(mtcars, w = wdatNA), dapply(mtcars, wbscale, wdatNA, na.rm = TRUE)) expect_equal(fscale(mtcars, w = wdatNA, na.rm = FALSE), dapply(mtcars, wbscale, wdatNA)) expect_equal(fscale(mtcNA, w = wdatNA, na.rm = FALSE), dapply(mtcNA, wbscale, wdatNA)) expect_equal(fscale(mtcNA, w = wdatNA), dapply(mtcNA, wbscale, wdatNA, na.rm = TRUE)) expect_equal(fscale(x, f, wNA), BY(x, f, wbscale, wNA, na.rm = TRUE)) expect_equal(fscale(x, f, wNA, na.rm = FALSE), BY(x, f, wbscale, wNA)) expect_equal(fscale(xNA, f, wNA, na.rm = FALSE), BY(xNA, f, wbscale, wNA)) # expect_equal(fscale(xNA, f, wNA), BY(xNA, f, wbscale, wNA, na.rm = TRUE)) # failed on release-windows-ix86+x86_64 expect_equal(replace_Inf(fscale(m, g, wdatNA), NA), BY(m, g, wbscale, wdatNA, na.rm = TRUE)) expect_equal(fscale(m, g, wdatNA, na.rm = FALSE), BY(m, g, wbscale, wdatNA)) expect_equal(fscale(mNA, g, wdatNA, na.rm = FALSE), BY(mNA, g, wbscale, wdatNA)) expect_equal(replace_Inf(fscale(mNA, g, wdatNA), NA), BY(mNA, g, wbscale, wdatNA, na.rm = TRUE)) expect_equal(replace_Inf(fscale(mtcars, g, wdatNA), NA), BY(mtcars, g, wbscale, wdatNA, na.rm = TRUE)) expect_equal(fscale(mtcars, g, wdatNA, na.rm = FALSE), BY(mtcars, g, wbscale, wdatNA)) expect_equal(fscale(mtcNA, g, wdatNA, na.rm = FALSE), BY(mtcNA, g, wbscale, wdatNA)) expect_equal(replace_Inf(fscale(mtcNA, g, wdatNA), NA), BY(mtcNA, g, wbscale, wdatNA, na.rm = TRUE)) }) wsu <- function(x, w) if(is.null(dim(x))) `attributes<-`(qsu.default(x, w = w)[3:4], NULL) else `attributes<-`(qsu(x, w = w)[,3:4], NULL) wsuby <- function(x, f, w) if(is.null(dim(x))) `attributes<-`(qsu.default(x, f, w = w)[, 3:4], NULL) else `attributes<-`(qsu(x, f, w = w)[,3:4,], NULL) test_that("Weighted customized scaling works as intended", { expect_equal(wsu(fscale(x, w = w, mean = 5.1, sd = 3.9), w = w), c(5.1, 3.9)) expect_equal(wsu(fscale(x, w = w, mean = 5.1, sd = 3.9, na.rm = FALSE), w = w), c(5.1, 3.9)) expect_equal(wsu(fscale(xNA, w = w, mean = 5.1, sd = 3.9, na.rm = FALSE), w = w), c(NaN, NA)) expect_equal(wsu(fscale(xNA, w = w, mean = 5.1, sd = 3.9), w = w), c(5.1, 3.9), w = w) expect_equal(qM(fscale(mtcars, w = wdat, mean = 5.1, sd = 3.9)), fscale(m, w = wdat, mean = 5.1, sd = 3.9)) expect_equal(wsu(fscale(m, w = wdat, mean = 5.1, sd = 3.9), w = wdat), rep(c(5.1, 3.9), c(11, 11))) expect_equal(wsu(fscale(m, w = wdat, mean = 5.1, sd = 3.9, na.rm = FALSE), w = wdat), rep(c(5.1, 3.9), c(11, 11))) expect_equal(wsu(fscale(mNA, w = wdat, mean = 5.1, sd = 3.9, na.rm = FALSE), w = wdat), rep(c(5.1, 3.9), c(11, 11))+miss) expect_equal(wsu(fscale(mNA, w = wdat, mean = 5.1, sd = 3.9), w = wdat), rep(c(5.1, 3.9), c(11, 11))) expect_equal(wsuby(fscale(x, f, w = w, mean = 5.1, sd = 3.9), f, w = w), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) expect_equal(wsuby(fscale(x, f, w = w, mean = 5.1, sd = 3.9, na.rm = FALSE), f, w = w), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) expect_equal(wsuby(fscale(xNA, f, w = w, mean = 5.1, sd = 3.9), f, w = w), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) expect_equal(wsu(fscale(x, w = w, mean = FALSE, sd = 3.9), w = w), c(fmean(x, w = w), 3.9)) expect_equal(wsu(fscale(x, w = w, mean = FALSE, sd = 3.9, na.rm = FALSE), w = w), c(fmean(x, w = w), 3.9)) expect_equal(wsu(fscale(xNA, w = w, mean = FALSE, sd = 3.9, na.rm = FALSE), w = w), c(NaN, NA)) expect_equal(wsu(fscale(xNA, w = w, mean = FALSE, sd = 3.9), w = w), c(fmean(xNA, w = w), 3.9)) expect_equal(qM(fscale(mtcars, w = wdat, mean = FALSE, sd = 3.9)), fscale(m, w = wdat, mean = FALSE, sd = 3.9)) # ... # expect_equal(wsuby(fscale(x, f, w = w, mean = "overall.mean", sd = 3.9), f, w = w), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) # expect_equal(wsuby(fscale(x, f, w = w, mean = FALSE, sd = 3.9, na.rm = FALSE), f, w = w), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) # expect_equal(wsuby(fscale(xNA, f, w = w, mean = FALSE, sd = 3.9), f, w = w), rep(c(5.1, 3.9), rep(fnlevels(f), 2))) }) test_that("Weighted customized scaling performs like wbscale (defined above)", { # complete weights expect_equal(fscale(NA, w = 1, mean = 5.1, sd = 3.9), wbscale(NA, 1, mean = 5.1, sd = 3.9)) expect_equal(fscale(NA, w = 1, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(NA, 1, mean = 5.1, sd = 3.9)) expect_equal(fscale(1, w = 1, mean = 5.1, sd = 3.9), wbscale(1, w = 1, mean = 5.1, sd = 3.9)) expect_equal(fscale(1:3, w = 1:3, mean = 5.1, sd = 3.9), wbscale(1:3, 1:3, mean = 5.1, sd = 3.9)) expect_equal(fscale(-1:1, w = 1:3, mean = 5.1, sd = 3.9), wbscale(-1:1, 1:3, mean = 5.1, sd = 3.9)) expect_equal(fscale(1, w = 1, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(1, 1, mean = 5.1, sd = 3.9)) expect_equal(fscale(1:3, w = c(0.99,3454,1.111), na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(1:3, c(0.99,3454,1.111), mean = 5.1, sd = 3.9)) expect_equal(fscale(-1:1, w = 1:3, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(-1:1, 1:3, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, w = w, mean = 5.1, sd = 3.9), wbscale(x, w, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, w = w, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(x, w, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, w = w, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(xNA, w, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, w = w, mean = 5.1, sd = 3.9), wbscale(xNA, w, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(qM(fscale(mtcars, w = wdat, mean = 5.1, sd = 3.9)), fscale(m, w = wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, w = wdat, mean = 5.1, sd = 3.9), dapply(m, wbscale, wdat, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(m, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(mNA, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, w = wdat, mean = 5.1, sd = 3.9), dapply(mNA, wbscale, wdat, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, w = wdat, mean = 5.1, sd = 3.9), dapply(mtcars, wbscale, wdat, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(mtcars, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(mtcNA, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, w = wdat, mean = 5.1, sd = 3.9), dapply(mtcNA, wbscale, wdat, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, f, w, mean = 5.1, sd = 3.9), BY(x, f, wbscale, w, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, f, w, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(x, f, wbscale, w, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, f, w, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(xNA, f, wbscale, w, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, f, w, mean = 5.1, sd = 3.9), BY(xNA, f, wbscale, w, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, g, wdat, mean = 5.1, sd = 3.9), BY(m, g, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(m, g, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(mNA, g, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, g, wdat, mean = 5.1, sd = 3.9), BY(mNA, g, wbscale, wdat, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, g, wdat, mean = 5.1, sd = 3.9), BY(mtcars, g, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(mtcars, g, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(mtcNA, g, wbscale, wdat, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, g, wdat, mean = 5.1, sd = 3.9), BY(mtcNA, g, wbscale, wdat, na.rm = TRUE, mean = 5.1, sd = 3.9)) # missing weights expect_equal(fscale(NA, w = NA, mean = 5.1, sd = 3.9), wbscale(NA, NA, mean = 5.1, sd = 3.9)) expect_equal(fscale(NA, w = NA, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(NA, NA, mean = 5.1, sd = 3.9)) expect_equal(fscale(1, w = NA, mean = 5.1, sd = 3.9), wbscale(1, w = NA, mean = 5.1, sd = 3.9)) expect_equal(fscale(1:3, w = c(NA,1:2), mean = 5.1, sd = 3.9), wbscale(1:3, c(NA,1:2), na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(-1:1, w = c(NA,1:2), mean = 5.1, sd = 3.9), wbscale(-1:1, c(NA,1:2), na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(1, w = NA, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(1, NA, mean = 5.1, sd = 3.9)) expect_equal(fscale(1:3, w = c(NA,1:2), na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(1:3, c(NA,1:2), mean = 5.1, sd = 3.9)) expect_equal(fscale(-1:1, w = c(NA,1:2), na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(-1:1, c(NA,1:2), mean = 5.1, sd = 3.9)) expect_equal(fscale(x, w = wNA, mean = 5.1, sd = 3.9), wbscale(x, wNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, w = wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(x, wNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, w = wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), wbscale(xNA, wNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, w = wNA, mean = 5.1, sd = 3.9), wbscale(xNA, wNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(qM(fscale(mtcars, w = wdatNA, mean = 5.1, sd = 3.9)), fscale(m, w = wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, w = wdatNA, mean = 5.1, sd = 3.9), dapply(m, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(m, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(mNA, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, w = wdatNA, mean = 5.1, sd = 3.9), dapply(mNA, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, w = wdatNA, mean = 5.1, sd = 3.9), dapply(mtcars, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(mtcars, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), dapply(mtcNA, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, w = wdatNA, mean = 5.1, sd = 3.9), dapply(mtcNA, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, f, wNA, mean = 5.1, sd = 3.9), BY(x, f, wbscale, wNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(x, f, wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(x, f, wbscale, wNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(xNA, f, wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(xNA, f, wbscale, wNA, mean = 5.1, sd = 3.9)) # expect_equal(fscale(xNA, f, wNA, mean = 5.1, sd = 3.9), BY(xNA, f, wbscale, wNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) # failed on release-windows-ix86+x86_64 expect_equal(replace_Inf(fscale(m, g, wdatNA, mean = 5.1, sd = 3.9), NA), BY(m, g, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(m, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(m, g, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(mNA, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(mNA, g, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(replace_Inf(fscale(mNA, g, wdatNA, mean = 5.1, sd = 3.9), NA), BY(mNA, g, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(replace_Inf(fscale(mtcars, g, wdatNA, mean = 5.1, sd = 3.9), NA), BY(mtcars, g, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcars, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(mtcars, g, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(fscale(mtcNA, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), BY(mtcNA, g, wbscale, wdatNA, mean = 5.1, sd = 3.9)) expect_equal(replace_Inf(fscale(mtcNA, g, wdatNA, mean = 5.1, sd = 3.9), NA), BY(mtcNA, g, wbscale, wdatNA, na.rm = TRUE, mean = 5.1, sd = 3.9)) }) test_that("Weighted customized scaling special cases perform as intended ", { # NOTE: These tests are currently only run with complete weights. STill implement them for missing weights ... # No mean / centering expect_equal(fscale(x, w = w, mean = FALSE, sd = 3.9), wbscale(x, na.rm = TRUE, w = w, mean = fmean(x, w = w), sd = 3.9)) expect_equal(fscale(x, w = w, mean = FALSE, sd = 3.9, na.rm = FALSE), wbscale(x, w = w, mean = fmean(x, w = w), sd = 3.9)) expect_equal(fscale(xNA, w = w, mean = FALSE, sd = 3.9, na.rm = FALSE), wbscale(xNA, w = w, mean = fmean(xNA, w = w), sd = 3.9)) expect_equal(fscale(xNA, w = w, mean = FALSE, sd = 3.9), wbscale(xNA, na.rm = TRUE, w = w, mean = fmean(xNA, w = w), sd = 3.9)) expect_equal(qM(fscale(mtcars, w = wdat, mean = FALSE, sd = 3.9)), fscale(m, w = wdat, mean = FALSE, sd = 3.9)) expect_equal(fmean(fscale(mtcars, w = wdat, mean = FALSE, sd = 3.9), w = wdat), fmean(mtcars, w = wdat)) expect_equal(unname(fsd(fscale(mtcars, w = wdat, mean = FALSE, sd = 3.9), w = wdat)), rep(3.9, length(mtcars))) expect_equal(fscale(x, f, w, mean = FALSE), unlist(Map(wbscale, split(x, f), split(w, f), na.rm = TRUE), use.names = FALSE) + B(x, f, w)) expect_equal(fscale(x, f, w, mean = FALSE, na.rm = FALSE), unlist(Map(wbscale, split(x, f), split(w, f)), use.names = FALSE) + B(x, f, w)) expect_equal(fscale(xNA, f, w, mean = FALSE, na.rm = FALSE), unlist(Map(wbscale, split(xNA, f), split(w, f)), use.names = FALSE) + B(xNA, f, w)) expect_equal(fscale(xNA, f, w, mean = FALSE), unlist(Map(wbscale, split(xNA, f), split(w, f), na.rm = TRUE), use.names = FALSE) + B(xNA, f, w)) # Centering on overall mean expect_equal(fscale(x, f, w, mean = "overall.mean"), unlist(Map(wbscale, split(x, f), split(w, f), na.rm = TRUE), use.names = FALSE) + B(x, w = w)) expect_equal(fscale(x, f, w, mean = "overall.mean", na.rm = FALSE), unlist(Map(wbscale, split(x, f), split(w, f)), use.names = FALSE) + B(x, w = w)) # expect_equal(fscale(xNA, f, w, mean = "overall.mean", na.rm = FALSE), unlist(Map(wbscale, split(xNA, f), split(w, f)), use.names = FALSE) + B(xNA, w = w)) # Not the same !! expect_equal(fscale(xNA, f, w, mean = "overall.mean"), unlist(Map(wbscale, split(xNA, f), split(w, f), na.rm = TRUE), use.names = FALSE) + B(xNA, w = w)) # Scaling by within-sd expect_equal(fscale(x, f, w, sd = "within.sd"), unlist(Map(wbscale, split(x, f), split(w, f), na.rm = TRUE), use.names = FALSE) * fsd(W(x, f, w), w = w)) expect_equal(fscale(x, f, w, sd = "within.sd", na.rm = FALSE), unlist(Map(wbscale, split(x, f), split(w, f)), use.names = FALSE) * fsd(W(x, f, w), w = w)) # expect_equal(fscale(xNA, f, w, sd = "within.sd", na.rm = FALSE), unlist(Map(wbscale, split(xNA, f), split(w, f)), use.names = FALSE) * fsd(W(xNA, f, w), w = w)) # Not the same !! expect_equal(fscale(xNA, f, w, sd = "within.sd"), unlist(Map(wbscale, split(xNA, f), split(w, f), na.rm = TRUE), use.names = FALSE) * fsd(W(xNA, f, w), w = w)) # Centering on overall mean and scaling by within-sd expect_equal(fscale(x, f, w, mean = "overall.mean", sd = "within.sd"), unlist(Map(wbscale, split(x, f), split(w, f), na.rm = TRUE), use.names = FALSE) * fsd(W(x, f, w), w = w) + B(x, w = w)) expect_equal(fscale(x, f, w, mean = "overall.mean", sd = "within.sd", na.rm = FALSE), unlist(Map(wbscale, split(x, f), split(w, f)), use.names = FALSE) * fsd(W(x, f, w), w = w) + B(x, w = w)) # expect_equal(fscale(xNA, f, w, mean = "overall.mean", sd = "within.sd", na.rm = FALSE), unlist(Map(wbscale, split(xNA, f), split(w, f)), use.names = FALSE) * fsd(W(xNA, f, w), w = w) + B(xNA, w = w)) # Not the same !! expect_equal(fscale(xNA, f, w, mean = "overall.mean", sd = "within.sd"), unlist(Map(wbscale, split(xNA, f), split(w, f), na.rm = TRUE), use.names = FALSE) * fsd(W(xNA, f, w), w = w) + B(xNA, w = w)) }) test_that("fscale performs numerically stable", { expect_true(all_obj_equal(replicate(50, fscale(1), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g), simplify = FALSE))) }) test_that("fscale customized scaling performs numerically stable", { expect_true(all_obj_equal(replicate(50, fscale(1, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, mean = 5.1, sd = 3.9), simplify = FALSE))) }) test_that("fscale with complete weights performs numerically stable", { expect_true(all_obj_equal(replicate(50, fscale(1, w = 1), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = 1), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = 1, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = w), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = w, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = w, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = w), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, w), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, w, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, w, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, w), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdat), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdat, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdat), simplify = FALSE))) }) test_that("fscale customized scaling with complete weights performs numerically stable", { expect_true(all_obj_equal(replicate(50, fscale(1, w = 1, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = 1, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = 1, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = w, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = w, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = w, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = w, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, w, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, w, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, w, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, w, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdat, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdat, mean = 5.1, sd = 3.9), simplify = FALSE))) }) test_that("fscale with missing weights performs numerically stable", { expect_true(all_obj_equal(replicate(50, fscale(1, w = NA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = NA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = NA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = wNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = wNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = wNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = wNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, wNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, wNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, wNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, wNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdatNA), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdatNA, na.rm = FALSE), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdatNA), simplify = FALSE))) }) test_that("fscale customized scaling with missing weights performs numerically stable", { expect_true(all_obj_equal(replicate(50, fscale(1, w = NA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = NA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(NA, w = NA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = wNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, w = wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, w = wNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, w = wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, w = wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, wNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(x, f, wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, wNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(xNA, f, wNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(m, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mNA, g, wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcars, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdatNA, na.rm = FALSE, mean = 5.1, sd = 3.9), simplify = FALSE))) expect_true(all_obj_equal(replicate(50, fscale(mtcNA, g, wdatNA, mean = 5.1, sd = 3.9), simplify = FALSE))) }) # NOTE: fscale(c(a, a)) gives c(NaN, NaN) (sd is 0) !!! test_that("fscale handles special values in the right way", { expect_equal(fscale(NA), NA_real_) expect_equal(fscale(NaN), NA_real_) expect_equal(fscale(Inf), NA_real_) expect_equal(fscale(-Inf), NA_real_) expect_equal(fscale(TRUE), NA_real_) expect_equal(fscale(FALSE), NA_real_) expect_equal(fscale(NA, na.rm = FALSE), NA_real_) expect_equal(fscale(NaN, na.rm = FALSE), NA_real_) expect_equal(fscale(Inf, na.rm = FALSE), NA_real_) expect_equal(fscale(-Inf, na.rm = FALSE), NA_real_) expect_equal(fscale(TRUE, na.rm = FALSE), NA_real_) expect_equal(fscale(FALSE, na.rm = FALSE), NA_real_) expect_equal(fscale(c(1,NA)), c(NA_real_,NA_real_)) expect_equal(fscale(c(1,NaN)), c(NA_real_,NA_real_)) expect_equal(fscale(c(1,Inf)), c(NA_real_,NA_real_)) expect_equal(fscale(c(1,-Inf)), c(NA_real_,NA_real_)) expect_equal(fscale(c(1,Inf), na.rm = FALSE), c(NA_real_,NA_real_)) expect_equal(fscale(c(1,-Inf), na.rm = FALSE), c(NA_real_,NA_real_)) expect_equal(fscale(c(FALSE,FALSE), na.rm = FALSE), c(NaN,NaN)) expect_equal(fscale(c(1,1), na.rm = FALSE), c(NaN,NaN)) }) test_that("fscale with weights handles special values in the right way", { expect_equal(fscale(NA, w = 1), NA_real_) expect_equal(fscale(NaN, w = 1), NA_real_) expect_equal(fscale(Inf, w = 1), NA_real_) expect_equal(fscale(-Inf, w = 1), NA_real_) expect_equal(fscale(TRUE, w = 1), NA_real_) expect_equal(fscale(FALSE, w = 1), NA_real_) expect_equal(fscale(NA, w = 1, na.rm = FALSE), NA_real_) expect_equal(fscale(NaN, w = 1, na.rm = FALSE), NA_real_) expect_equal(fscale(Inf, w = 1, na.rm = FALSE), NA_real_) expect_equal(fscale(-Inf, w = 1, na.rm = FALSE), NA_real_) expect_equal(fscale(TRUE, w = 1, na.rm = FALSE), NA_real_) expect_equal(fscale(FALSE, w = 1, na.rm = FALSE), NA_real_) expect_equal(fscale(NA, w = NA), NA_real_) expect_equal(fscale(NaN, w = NA), NA_real_) expect_equal(fscale(Inf, w = NA), NA_real_) expect_equal(fscale(-Inf, w = NA), NA_real_) expect_equal(fscale(TRUE, w = NA), NA_real_) expect_equal(fscale(FALSE, w = NA), NA_real_) expect_equal(fscale(NA, w = NA, na.rm = FALSE), NA_real_) expect_equal(fscale(NaN, w = NA, na.rm = FALSE), NA_real_) expect_equal(fscale(Inf, w = NA, na.rm = FALSE), NA_real_) expect_equal(fscale(-Inf, w = NA, na.rm = FALSE), NA_real_) expect_equal(fscale(TRUE, w = NA, na.rm = FALSE), NA_real_) expect_equal(fscale(FALSE, w = NA, na.rm = FALSE), NA_real_) expect_equal(fscale(1:3, w = c(1,Inf,3)), c(NA_real_,NA_real_,NA_real_)) expect_equal(fscale(1:3, w = c(1,-Inf,3)), c(NA_real_,NA_real_,NA_real_)) expect_equal(fscale(1:3, w = c(1,Inf,3), na.rm = FALSE), c(NA_real_,NA_real_,NA_real_)) expect_equal(fscale(1:3, w = c(1,-Inf,3), na.rm = FALSE), c(NA_real_,NA_real_,NA_real_)) }) test_that("fscale produces errors for wrong input", { expect_error(fscale("a")) expect_error(fscale(NA_character_)) expect_error(fscale(mNAc)) expect_error(fscale(mNAc, f)) expect_error(fscale(1:2,1:3)) expect_error(fscale(m,1:31)) expect_error(fscale(mtcars,1:31)) expect_error(fscale(mtcars, w = 1:31)) expect_error(fscale("a", w = 1)) expect_error(fscale(1:2, w = 1:3)) expect_error(fscale(NA_character_, w = 1)) expect_error(fscale(mNAc, w = wdat)) expect_error(fscale(mNAc, f, wdat)) expect_error(fscale(mNA, w = 1:33)) expect_error(fscale(1:2,1:2, 1:3)) expect_error(fscale(m,1:32,1:20)) expect_error(fscale(mtcars,1:32,1:10)) expect_error(fscale(1:2, w = c("a","b"))) expect_error(fscale(wlddev)) expect_error(fscale(wlddev, w = wlddev$year)) expect_error(fscale(wlddev, wlddev$iso3c)) expect_error(fscale(wlddev, wlddev$iso3c, wlddev$year)) }) test_that("fscale shoots errors for wrong input to mean and sd", { expect_error(fscale(x, sd = FALSE)) expect_error(fscale(m, sd = FALSE)) expect_error(fscale(mtcars, sd = FALSE)) expect_error(fscale(x, sd = "bla")) expect_error(fscale(x, mean = "bla")) expect_error(fscale(x, sd = "within.sd")) expect_error(fscale(m, sd = "within.sd")) expect_error(fscale(mtcars, sd = "within.sd")) expect_error(fscale(x, mean = "overall.mean")) expect_error(fscale(m, mean = "overall.mean")) expect_error(fscale(mtcars, mean = "overall.mean")) expect_error(fscale(m, mean = fmean(m))) expect_error(fscale(mtcars, mean = fmean(mtcars))) expect_error(fscale(m, sd = fsd(m))) expect_error(fscale(mtcars, sd = fsd(mtcars))) }) # Testing STD: Only testing wrong inputs, especially for data.frame method. Otherwise it is identical to fscale test_that("STD produces errors for wrong input", { expect_error(STD("a")) expect_error(STD(NA_character_)) expect_error(STD(mNAc)) expect_error(STD(mNAc, f)) expect_error(STD(1:2,1:3)) expect_error(STD(m,1:31)) expect_error(STD(mtcars,1:31)) expect_error(STD(mtcars, w = 1:31)) expect_error(STD("a", w = 1)) expect_error(STD(1:2, w = c("a","b"))) expect_error(STD(1:2, w = 1:3)) expect_error(STD(NA_character_, w = 1)) expect_error(STD(mNAc, w = wdat)) expect_error(STD(mNAc, f, wdat)) expect_error(STD(mNA, w = 1:33)) expect_error(STD(mtcNA, w = 1:33)) expect_error(STD(1:2,1:2, 1:3)) expect_error(STD(m,1:32,1:20)) expect_error(STD(mtcars,1:32,1:10)) expect_error(STD(1:2, 1:3, 1:2)) expect_error(STD(m,1:31,1:32)) expect_error(STD(mtcars,1:33,1:32)) }) test_that("STD.data.frame method is foolproof", { expect_visible(STD(wlddev)) expect_visible(STD(wlddev, w = wlddev$year)) expect_visible(STD(wlddev, w = ~year)) expect_visible(STD(wlddev, wlddev$iso3c)) expect_visible(STD(wlddev, ~iso3c)) expect_visible(STD(wlddev, ~iso3c + region)) expect_visible(STD(wlddev, wlddev$iso3c, wlddev$year)) expect_visible(STD(wlddev, ~iso3c, ~year)) expect_visible(STD(wlddev, cols = 9:12)) expect_visible(STD(wlddev, w = wlddev$year, cols = 9:12)) expect_visible(STD(wlddev, w = ~year, cols = 9:12)) expect_visible(STD(wlddev, wlddev$iso3c, cols = 9:12)) expect_visible(STD(wlddev, ~iso3c, cols = 9:12)) expect_visible(STD(wlddev, wlddev$iso3c, wlddev$year, cols = 9:12)) expect_visible(STD(wlddev, ~iso3c, ~year, cols = 9:12)) expect_visible(STD(wlddev, cols = c("PCGDP","LIFEEX"))) expect_visible(STD(wlddev, w = wlddev$year, cols = c("PCGDP","LIFEEX"))) expect_visible(STD(wlddev, w = ~year, cols = c("PCGDP","LIFEEX"))) expect_visible(STD(wlddev, wlddev$iso3c, cols = c("PCGDP","LIFEEX"))) expect_visible(STD(wlddev, ~iso3c, cols = c("PCGDP","LIFEEX"))) expect_visible(STD(wlddev, wlddev$iso3c, wlddev$year, cols = c("PCGDP","LIFEEX"))) expect_visible(STD(wlddev, ~iso3c, ~year, cols = c("PCGDP","LIFEEX"))) expect_error(STD(wlddev, cols = NULL)) expect_error(STD(wlddev, w = wlddev$year, cols = NULL)) expect_error(STD(wlddev, w = ~year, cols = NULL)) expect_error(STD(wlddev, wlddev$iso3c, cols = NULL)) expect_error(STD(wlddev, ~iso3c, cols = NULL)) expect_error(STD(wlddev, wlddev$iso3c, wlddev$year, cols = NULL)) expect_error(STD(wlddev, ~iso3c, ~year, cols = NULL)) expect_error(STD(wlddev, cols = 9:14)) expect_error(STD(wlddev, w = wlddev$year, cols = 9:14)) expect_error(STD(wlddev, w = ~year, cols = 9:14)) expect_error(STD(wlddev, wlddev$iso3c, cols = 9:14)) expect_error(STD(wlddev, ~iso3c, cols = 9:14)) expect_error(STD(wlddev, wlddev$iso3c, wlddev$year, cols = 9:14)) expect_error(STD(wlddev, ~iso3c, ~year, cols = 9:14)) expect_error(STD(wlddev, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, w = wlddev$year, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, w = ~year, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, wlddev$iso3c, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, ~iso3c, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, wlddev$iso3c, wlddev$year, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, ~iso3c, ~year, cols = c("PCGDP","LIFEEX","bla"))) expect_error(STD(wlddev, w = mtcars)) expect_error(STD(wlddev, w = 4)) expect_error(STD(wlddev, w = "year")) expect_error(STD(wlddev, w = ~year2)) # suppressWarnings(expect_error(STD(wlddev, w = ~year + region))) expect_error(STD(wlddev, mtcars)) expect_error(STD(wlddev, 2)) expect_error(STD(wlddev, "iso3c")) expect_error(STD(wlddev, ~iso3c2)) expect_error(STD(wlddev, ~iso3c + bla)) expect_error(STD(wlddev, mtcars$mpg, mtcars$cyl)) expect_error(STD(wlddev, 2, 4)) expect_error(STD(wlddev, ~iso3c2, ~year2)) expect_error(STD(wlddev, cols = ~bla)) expect_error(STD(wlddev, w = ~bla, cols = 9:12)) expect_error(STD(wlddev, w = 4, cols = 9:12)) expect_error(STD(wlddev, w = "year", cols = 9:12)) expect_error(STD(wlddev, w = ~yewar, cols = 9:12)) expect_error(STD(wlddev, mtcars$mpg, cols = 9:12)) expect_error(STD(wlddev, ~iso3c + ss, cols = 9:12)) expect_error(STD(wlddev, 2, cols = 9:12)) expect_error(STD(wlddev, "iso3c", cols = 9:12)) expect_error(STD(wlddev, wlddev$iso3c, ~year + bla, cols = 9:12)) expect_error(STD(wlddev, ~iso3c3, ~year, cols = 9:12)) expect_error(STD(wlddev, cols = c("PC3GDP","LIFEEX"))) })