downloading reverse dependencies ... downloading ascii_2.6.tar.gz ... ok downloading depcache_0.1-2.tar.gz ... ok downloading fc_0.1.0.tar.gz ... ok downloading foreach_1.5.2.tar.gz ... ok downloading GeoModels_1.1.9.tar.gz ... ok downloading globals_0.16.3.tar.gz ... ok downloading lintr_3.1.2.tar.gz ... ok downloading manipulateWidget_0.11.1.tar.gz ... ok downloading markmyassignment_0.8.8.tar.gz ... ok downloading MonetDB.R_2.0.0.tar.gz ... ok downloading MonteCarlo_1.0.6.tar.gz ... ok downloading multcomp_1.4-25.tar.gz ... ok downloading NMF_0.27.tar.gz ... ok downloading packager_1.15.2.tar.gz ... ok downloading pkgmaker_0.32.10.tar.gz ... ok downloading PopED_0.6.0.tar.gz ... ok downloading pryr_0.1.6.tar.gz ... ok downloading roxyglobals_1.0.0.tar.gz ... ok downloading simmer_4.4.6.3.tar.gz ... ok downloading sloop_1.0.1.tar.gz ... ok downloading svTools_0.9-5.tar.gz ... ok downloading targets_1.6.0.tar.gz ... ok downloading ASGS.foyer_0.3.3.tar.gz ... ok downloading BBmisc_1.13.tar.gz ... ok downloading BigVAR_1.1.2.tar.gz ... ok downloading cmR_1.1.tar.gz ... ok downloading cricketdata_0.2.3.tar.gz ... ok downloading flexmix_2.3-19.tar.gz ... ok downloading gitcreds_0.1.2.tar.gz ... ok downloading GREENeR_1.0.0.tar.gz ... ok downloading incR_2.1.0.tar.gz ... ok downloading knitr_1.45.tar.gz ... ok downloading mlr3_0.18.0.tar.gz ... ok downloading peperr_1.5.tar.gz ... ok downloading pkgdepends_0.7.2.tar.gz ... ok downloading prettyunits_1.2.0.tar.gz ... ok downloading processx_3.8.4.tar.gz ... ok downloading R.methodsS3_1.8.2.tar.gz ... ok downloading remotes_2.5.0.tar.gz ... ok downloading RSiena_1.4.7.tar.gz ... ok downloading SpaDES.core_2.0.3.tar.gz ... ok downloading WRS2_1.1-6.tar.gz ... ok downloading xfun_0.43.tar.gz ... ok installing dependencies ‘archive’, ‘asciicast’, ‘cleanr’, ‘clustermq’, ‘codetools’, ‘crew’, ‘document’, ‘doMPI’, ‘fakemake’, ‘future.batchtools’, ‘gghighlight’, ‘GoFKernel’, ‘googleCloudStorageR’, ‘GpGp’, ‘GPvecchia’, ‘ISwR’, ‘JuliaCall’, ‘MCS’, ‘mlr3data’, ‘mrgsolve’, ‘nanonext’, ‘NLMR’, ‘oskeyring’, ‘pak’, ‘paws.storage’, ‘pkgcache’, ‘quickPlot’, ‘reproducible’, ‘Require’, ‘rhub’, ‘rlecuyer’, ‘secretbase’, ‘SimComp’, ‘simmer.plot’, ‘SpaDES.tools’, ‘svMisc’, ‘synchronicity’, ‘targets’ Warning: package ‘NLMR’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘survPresmooth’, ‘sparseinv’, ‘mratios’, ‘MakefileR’, ‘simmer’, ‘getip’, ‘mirai’, ‘fpCompare’ begin installing package ‘survPresmooth’ begin installing package ‘MakefileR’ begin installing package ‘sparseinv’ begin installing package ‘getip’ begin installing package ‘fpCompare’ begin installing package ‘GpGp’ begin installing package ‘GoFKernel’ begin installing package ‘rlecuyer’ begin installing package ‘ISwR’ begin installing package ‘codetools’ begin installing package ‘synchronicity’ begin installing package ‘rhub’ begin installing package ‘cleanr’ begin installing package ‘document’ begin installing package ‘mrgsolve’ begin installing package ‘svMisc’ begin installing package ‘secretbase’ begin installing package ‘googleCloudStorageR’ begin installing package ‘nanonext’ begin installing package ‘paws.storage’ begin installing package ‘MCS’ begin installing package ‘gghighlight’ begin installing package ‘oskeyring’ begin installing package ‘JuliaCall’ begin installing package ‘mlr3data’ begin installing package ‘pkgcache’ begin installing package ‘asciicast’ begin installing package ‘pak’ * installing *source* package ‘fpCompare’ ... ** package ‘fpCompare’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fpCompare) begin installing package ‘Require’ * installing *source* package ‘MakefileR’ ... ** package ‘MakefileR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MakefileR) begin installing package ‘archive’ * installing *source* package ‘cleanr’ ... ** package ‘cleanr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleanr) begin installing package ‘fakemake’ * installing *source* package ‘GoFKernel’ ... ** package ‘GoFKernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GoFKernel) begin installing package ‘quickPlot’ * installing *source* package ‘document’ ... ** package ‘document’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (document) begin installing package ‘reproducible’ * installing *source* package ‘ISwR’ ... ** package ‘ISwR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ISwR) * installing *source* package ‘secretbase’ ... ** package ‘secretbase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTGsJrw/R.INSTALL1606d823d17f6e/secretbase/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c secret.c -o secret.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c secret2.c -o secret2.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o secretbase.so init.o secret.o secret2.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTGsJrw/R.INSTALL1606d823d17f6e/secretbase/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-secretbase/00new/secretbase/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (secretbase) * installing *source* package ‘oskeyring’ ... ** package ‘oskeyring’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp96doAo/R.INSTALL1606e9705646f8/oskeyring/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keyring-macos.c -o keyring-macos.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keyring-secret-service.c -o keyring-secret-service.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keyring-wincred.c -o keyring-wincred.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o oskeyring.so cleancall.o keyring-macos.o keyring-secret-service.o keyring-wincred.o utils.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp96doAo/R.INSTALL1606e9705646f8/oskeyring/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-oskeyring/00new/oskeyring/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oskeyring) * installing *source* package ‘codetools’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (codetools) begin installing package ‘doMPI’ begin installing package ‘clustermq’ begin installing package ‘future.batchtools’ begin installing package ‘simmer’ * installing *source* package ‘rlecuyer’ ... ** package ‘rlecuyer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpt1pfM8/R.INSTALL16069f6568c937/rlecuyer/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RngStream.c -o RngStream.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RngWrap.c -o RngWrap.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o rlecuyer.so RngStream.o RngWrap.o zzz.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpt1pfM8/R.INSTALL16069f6568c937/rlecuyer/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-rlecuyer/00new/rlecuyer/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlecuyer) begin installing package ‘targets’ * installing *source* package ‘MCS’ ... ** package ‘MCS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MCS) * installing *source* package ‘getip’ ... ** package ‘getip’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for ifaddrs.h... yes checking for socket in -lc... yes checking for socket in -lsocket... no ******************* Results of getip package configure ******************* * Socket Report * >> IFADDRS = -DHAS_IFADDRS * >> SA_LEN = * >> SOCKET_LIBS = ************************************************************************** configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRrwUgV/R.INSTALL1606872bd3655/getip/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DHAS_IFADDRS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getip_native.c -o getip_native.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DHAS_IFADDRS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hostname2ip.c -o hostname2ip.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DHAS_IFADDRS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ip_internal.c -o ip_internal.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DHAS_IFADDRS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validate.c -o validate.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o getip.so getip_native.o hostname2ip.o ip_internal.o validate.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRrwUgV/R.INSTALL1606872bd3655/getip/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-getip/00new/getip/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (getip) * installing *source* package ‘fakemake’ ... ** package ‘fakemake’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fakemake) * installing *source* package ‘googleCloudStorageR’ ... ** package ‘googleCloudStorageR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (googleCloudStorageR) * installing *source* package ‘gghighlight’ ... ** package ‘gghighlight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gghighlight) * installing *source* package ‘rhub’ ... ** package ‘rhub’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhub) * installing *source* package ‘survPresmooth’ ... ** package ‘survPresmooth’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoKk6yu/R.INSTALL16068048e1c23d/survPresmooth/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c alphaintegrand.c -o alphaintegrand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c1integrand1.c -o c1integrand1.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c1integrand2.c -o c1integrand2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c densuncens.c -o densuncens.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dintegrand.c -o dintegrand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dweibullder.c -o dweibullder.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ecdfuncens.c -o ecdfuncens.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c funplugin.c -o funplugin.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isevect.c -o isevect.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kernel.c -o kernel.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kernelboundary.c -o kernelboundary.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kernelder.c -o kernelder.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lscv.c -o lscv.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nadarayawatson.c -o nadarayawatson.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nadarayawatsonder.c -o nadarayawatsonder.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pilot2forhintegrand.c -o pilot2forhintegrand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c plogistder.c -o plogistder.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c presmdens2der.c -o presmdens2der.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c presmdensfast.c -o presmdensfast.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c presmestim.c -o presmestim.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c presmtwfast.c -o presmtwfast.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simpson.c -o simpson.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c termsmise.c -o termsmise.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c termsmisenopresmooth.c -o termsmisenopresmooth.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightspresmkm.c -o weightspresmkm.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o survPresmooth.so alphaintegrand.o c1integrand1.o c1integrand2.o densuncens.o dintegrand.o dweibullder.o ecdfuncens.o funplugin.o init.o isevect.o kernel.o kernelboundary.o kernelder.o lscv.o nadarayawatson.o nadarayawatsonder.o pilot2forhintegrand.o plogistder.o presmdens2der.o presmdensfast.o presmestim.o presmtwfast.o simpson.o termsmise.o termsmisenopresmooth.o weightspresmkm.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoKk6yu/R.INSTALL16068048e1c23d/survPresmooth/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-survPresmooth/00new/survPresmooth/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survPresmooth) begin installing package ‘mratios’ * installing *source* package ‘svMisc’ ... ** package ‘svMisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (svMisc) * installing *source* package ‘asciicast’ ... ** package ‘asciicast’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzAzbZY/R.INSTALL1606f35bfa142b/asciicast/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/processx/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r.c -o r.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/processx/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-13 -Wl,--export-dynamic -fopenmp -Wl,-O1 -o rem r.o common.o -L"/home/hornik/tmp/R-d-gcc-13/lib" -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/processx/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c client.c -o client.o gcc-13 -shared -L"/home/hornik/tmp/R-d-gcc-13/lib" -Wl,-O1 -o asciicastclient.so \ client.o common.o \ -L"/home/hornik/tmp/R-d-gcc-13/lib" -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzAzbZY/R.INSTALL1606f35bfa142b/asciicast/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-asciicast/00new/asciicast ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (asciicast) * installing *source* package ‘future.batchtools’ ... ** package ‘future.batchtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.batchtools) * installing *source* package ‘doMPI’ ... ** package ‘doMPI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doMPI) * installing *source* package ‘Require’ ... ** package ‘Require’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Require) * installing *source* package ‘quickPlot’ ... ** package ‘quickPlot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quickPlot) * installing *source* package ‘mlr3data’ ... ** package ‘mlr3data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3data) * installing *source* package ‘mratios’ ... ** package ‘mratios’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mratios) begin installing package ‘SimComp’ * installing *source* package ‘pkgcache’ ... ** package ‘pkgcache’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp65Qdvo/R.INSTALL1606f027d0f451/pkgcache/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lib.c -o lib.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winfiles.c -o winfiles.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o pkgcache.so errors.o init.o lib.o winfiles.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp65Qdvo/R.INSTALL1606f027d0f451/pkgcache/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pkgcache/00new/pkgcache/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgcache) * installing *source* package ‘reproducible’ ... ** package ‘reproducible’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reproducible) begin installing package ‘SpaDES.tools’ * installing *source* package ‘JuliaCall’ ... ** package ‘JuliaCall’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Shpqn/R.INSTALL1606ed396e071d/JuliaCall/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JuliaCall.cpp -o JuliaCall.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libjulia.cpp -o libjulia.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o JuliaCall.so JuliaCall.o RcppExports.o libjulia.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Shpqn/R.INSTALL1606ed396e071d/JuliaCall/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-JuliaCall/00new/JuliaCall/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JuliaCall) * installing *source* package ‘sparseinv’ ... ** package ‘sparseinv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5u6ADn/R.INSTALL16069352206dce/sparseinv/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_1.c -o amd_1.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_2.c -o amd_2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_aat.c -o amd_aat.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_control.c -o amd_control.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_defaults.c -o amd_defaults.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_dump.c -o amd_dump.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_global.c -o amd_global.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_info.c -o amd_info.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_order.c -o amd_order.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_order_wrapper.c -o amd_order_wrapper.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_post_tree.c -o amd_post_tree.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_postorder.c -o amd_postorder.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_preprocess.c -o amd_preprocess.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amd_valid.c -o amd_valid.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparseinv-init.c -o sparseinv-init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sparseinvRcpp.cpp -o sparseinvRcpp.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o sparseinv.so RcppExports.o amd_1.o amd_2.o amd_aat.o amd_control.o amd_defaults.o amd_dump.o amd_global.o amd_info.o amd_order.o amd_order_wrapper.o amd_post_tree.o amd_postorder.o amd_preprocess.o amd_valid.o sparseinv-init.o sparseinvRcpp.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5u6ADn/R.INSTALL16069352206dce/sparseinv/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-sparseinv/00new/sparseinv/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseinv) * installing *source* package ‘SimComp’ ... ** package ‘SimComp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SimComp) * installing *source* package ‘archive’ ... ** package ‘archive’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! PKG_CONFIG_PATH= PKG_CFLAGS= PKG_LIBS=-larchive ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLIYyW9/R.INSTALL160eb553c34345/archive/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c archive.cpp -o archive.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c archive_extract.cpp -o archive_extract.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c archive_read.cpp -o archive_read.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c archive_write.cpp -o archive_write.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c archive_write_direct.cpp -o archive_write_direct.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c archive_write_files.cpp -o archive_write_files.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c r_archive.cpp -o r_archive.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection/connection.c -o connection/connection.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o archive.so archive.o archive_extract.o archive_read.o archive_write.o archive_write_direct.o archive_write_files.o cpp11.o r_archive.o -larchive -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLIYyW9/R.INSTALL160eb553c34345/archive/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-archive/00new/archive/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archive) * installing *source* package ‘synchronicity’ ... ** package ‘synchronicity’ successfully unpacked and MD5 sums checked ** using staged installation checking for Sun Studio compiler... no checking for OS... Linux ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppmmAuj/R.INSTALL1606ad626e806c/synchronicity/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst -DLINUX -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst -DLINUX -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c synchronicity.cpp -o synchronicity.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/local_time/local_date_time.hpp:15, from synchronicity.cpp:4: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/move/algorithm.hpp:32, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/move/move.hpp:32, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/interprocess/detail/managed_open_or_create_impl.hpp:37, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/interprocess/sync/named_upgradable_mutex.hpp:27, from synchronicity.cpp:3: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/iterator/iterator_facade.hpp:13, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/range/iterator_range_core.hpp:27, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/algorithm/string/replace.hpp:16, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/date_facet.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian_io.hpp:16, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian.hpp:31, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:12, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/date_time/local_time/local_date_time.hpp:18: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp: At global scope: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst -DLINUX -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o synchronicity.so RcppExports.o synchronicity.o util.o -lrt -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppmmAuj/R.INSTALL1606ad626e806c/synchronicity/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-synchronicity/00new/synchronicity/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (synchronicity) * installing *source* package ‘nanonext’ ... ** package ‘nanonext’ successfully unpacked and MD5 sums checked ** using staged installation Found 'libmbedtls' -I/usr/include No existing 'libnng' >= 1.5 found Detecting 'cmake'... /usr/bin/cmake Detecting 'xz'... /usr/bin/xz Compiling 'libnng' from source ... -- The C compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-13 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Configuring for NNG version 1.7.2 -- Performing Test NNG_HIDDEN_VISIBILITY -- Performing Test NNG_HIDDEN_VISIBILITY - Success -- Looking for strlcpy -- Looking for strlcpy - not found -- Looking for strnlen -- Looking for strnlen - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for lockf -- Looking for lockf - found -- Looking for flock -- Looking for flock - found -- Looking for getrandom -- Looking for getrandom - found -- Looking for arc4random_buf -- Looking for arc4random_buf - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for sem_wait in pthread -- Looking for sem_wait in pthread - found -- Looking for pthread_atfork in pthread -- Looking for pthread_atfork in pthread - found -- Looking for pthread_set_name_np in pthread -- Looking for pthread_set_name_np in pthread - not found -- Looking for pthread_setname_np in pthread -- Looking for pthread_setname_np in pthread - found -- Looking for gethostbyname in nsl -- Looking for gethostbyname in nsl - found -- Looking for socket in socket -- Looking for socket in socket - not found -- Looking for __atomic_load_1 in atomic -- Looking for __atomic_load_1 in atomic - found -- Looking for AF_UNIX -- Looking for AF_UNIX - found -- Looking for backtrace_symbols_fd -- Looking for backtrace_symbols_fd - found -- Performing Test NNG_HAVE_MSG_CONTROL -- Performing Test NNG_HAVE_MSG_CONTROL - Success -- Looking for eventfd -- Looking for eventfd - found -- Looking for kqueue -- Looking for kqueue - not found -- Looking for port_create -- Looking for port_create - not found -- Looking for epoll_create -- Looking for epoll_create - found -- Looking for epoll_create1 -- Looking for epoll_create1 - found -- Looking for getpeereid -- Looking for getpeereid - not found -- Looking for SO_PEERCRED -- Looking for SO_PEERCRED - found -- Performing Test NNG_HAVE_SOCKPEERCRED -- Performing Test NNG_HAVE_SOCKPEERCRED - Failed -- Looking for LOCAL_PEERCRED -- Looking for LOCAL_PEERCRED - not found -- Looking for LOCAL_PEERPID -- Looking for LOCAL_PEERPID - not found -- Looking for getpeerucred -- Looking for getpeerucred - not found -- Looking for atomic_flag_test_and_set -- Looking for atomic_flag_test_and_set - found -- Looking for socketpair -- Looking for socketpair - found -- Found mbedTLS: /usr/lib/x86_64-linux-gnu/libmbedtls.so (found version "2.28.7") -- Configuring done (4.4s) -- Generating done (0.1s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521 gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' [ 0%] Building C object CMakeFiles/nng.dir/src/nng.c.o [ 2%] Building C object CMakeFiles/nng.dir/src/core/aio.c.o [ 2%] Building C object CMakeFiles/nng.dir/src/core/device.c.o [ 4%] Building C object CMakeFiles/nng.dir/src/core/dialer.c.o [ 4%] Building C object CMakeFiles/nng.dir/src/core/sockfd.c.o [ 6%] Building C object CMakeFiles/nng.dir/src/core/file.c.o [ 8%] Building C object CMakeFiles/nng.dir/src/core/idhash.c.o [ 8%] Building C object CMakeFiles/nng.dir/src/core/init.c.o [ 10%] Building C object CMakeFiles/nng.dir/src/core/list.c.o [ 10%] Building C object CMakeFiles/nng.dir/src/core/listener.c.o [ 12%] Building C object CMakeFiles/nng.dir/src/core/lmq.c.o [ 14%] Building C object CMakeFiles/nng.dir/src/core/message.c.o [ 14%] Building C object CMakeFiles/nng.dir/src/core/msgqueue.c.o [ 16%] Building C object CMakeFiles/nng.dir/src/core/options.c.o [ 16%] Building C object CMakeFiles/nng.dir/src/core/pollable.c.o [ 18%] Building C object CMakeFiles/nng.dir/src/core/panic.c.o [ 20%] Building C object CMakeFiles/nng.dir/src/core/pipe.c.o [ 20%] Building C object CMakeFiles/nng.dir/src/core/reap.c.o [ 22%] Building C object CMakeFiles/nng.dir/src/core/socket.c.o [ 22%] Building C object CMakeFiles/nng.dir/src/core/stats.c.o [ 24%] Building C object CMakeFiles/nng.dir/src/core/stream.c.o [ 24%] Building C object CMakeFiles/nng.dir/src/core/strs.c.o [ 26%] Building C object CMakeFiles/nng.dir/src/core/taskq.c.o [ 28%] Building C object CMakeFiles/nng.dir/src/core/tcp.c.o [ 28%] Building C object CMakeFiles/nng.dir/src/core/thread.c.o [ 30%] Building C object CMakeFiles/nng.dir/src/core/url.c.o [ 30%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_alloc.c.o [ 32%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_atomic.c.o [ 34%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_clock.c.o [ 34%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_debug.c.o [ 36%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_file.c.o [ 36%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_ipcconn.c.o [ 38%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_ipcdial.c.o [ 40%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_ipclisten.c.o [ 40%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_peerid.c.o [ 42%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_pipe.c.o [ 42%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_resolv_gai.c.o [ 44%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_sockaddr.c.o [ 44%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_socketpair.c.o [ 46%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_sockfd.c.o [ 48%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_tcpconn.c.o [ 48%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_tcpdial.c.o [ 50%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_tcplisten.c.o [ 50%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_thread.c.o [ 52%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_udp.c.o [ 54%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_pollq_epoll.c.o [ 54%] Building C object CMakeFiles/nng.dir/src/platform/posix/posix_rand_arc4random.c.o [ 56%] Building C object CMakeFiles/nng.dir/src/sp/protocol/bus0/bus.c.o [ 56%] Building C object CMakeFiles/nng.dir/src/sp/protocol/pair0/pair.c.o [ 58%] Building C object CMakeFiles/nng.dir/src/sp/protocol/pipeline0/push.c.o [ 60%] Building C object CMakeFiles/nng.dir/src/sp/protocol/pipeline0/pull.c.o [ 60%] Building C object CMakeFiles/nng.dir/src/sp/protocol/pubsub0/pub.c.o [ 62%] Building C object CMakeFiles/nng.dir/src/sp/protocol/pubsub0/sub.c.o [ 62%] Building C object CMakeFiles/nng.dir/src/sp/protocol/pubsub0/xsub.c.o [ 64%] Building C object CMakeFiles/nng.dir/src/sp/protocol/reqrep0/req.c.o [ 64%] Building C object CMakeFiles/nng.dir/src/sp/protocol/reqrep0/xreq.c.o [ 66%] Building C object CMakeFiles/nng.dir/src/sp/protocol/reqrep0/rep.c.o [ 68%] Building C object CMakeFiles/nng.dir/src/sp/protocol/reqrep0/xrep.c.o [ 68%] Building C object CMakeFiles/nng.dir/src/sp/protocol/survey0/survey.c.o [ 70%] Building C object CMakeFiles/nng.dir/src/sp/protocol/survey0/xsurvey.c.o [ 70%] Building C object CMakeFiles/nng.dir/src/sp/protocol/survey0/respond.c.o [ 72%] Building C object CMakeFiles/nng.dir/src/sp/protocol/survey0/xrespond.c.o [ 74%] Building C object CMakeFiles/nng.dir/src/sp/transport/socket/sockfd.c.o [ 74%] Building C object CMakeFiles/nng.dir/src/sp/transport/inproc/inproc.c.o [ 76%] Building C object CMakeFiles/nng.dir/src/sp/transport/ipc/ipc.c.o [ 76%] Building C object CMakeFiles/nng.dir/src/sp/transport/tcp/tcp.c.o [ 78%] Building C object CMakeFiles/nng.dir/src/sp/transport/tls/tls.c.o [ 80%] Building C object CMakeFiles/nng.dir/src/sp/transport/ws/websocket.c.o [ 80%] Building C object CMakeFiles/nng.dir/src/sp/protocol.c.o [ 82%] Building C object CMakeFiles/nng.dir/src/sp/transport.c.o [ 82%] Building C object CMakeFiles/nng.dir/src/supplemental/base64/base64.c.o [ 84%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_public.c.o [ 84%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_client.c.o [ 86%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_chunk.c.o [ 88%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_conn.c.o [ 88%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_msg.c.o [ 90%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_schemes.c.o [ 90%] Building C object CMakeFiles/nng.dir/src/supplemental/http/http_server.c.o [ 92%] Building C object CMakeFiles/nng.dir/src/supplemental/sha1/sha1.c.o [ 94%] Building C object CMakeFiles/nng.dir/src/supplemental/tls/mbedtls/tls.c.o [ 94%] Building C object CMakeFiles/nng.dir/src/supplemental/tls/tls_common.c.o [ 96%] Building C object CMakeFiles/nng.dir/src/supplemental/util/options.c.o [ 96%] Building C object CMakeFiles/nng.dir/src/supplemental/util/platform.c.o [ 98%] Building C object CMakeFiles/nng.dir/src/supplemental/websocket/websocket.c.o [100%] Linking C static library libnng.a make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' [100%] Built target nng make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' Install the project... -- Install configuration: "Release" gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/nng-daa5521' ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aio.c -o aio.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c core.c -o core.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keycert.c -o keycert.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c protocol.c -o protocol.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thread.c -o thread.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tls.c -o tls.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -I/usr/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o nanonext.so aio.o core.o init.o keycert.o protocol.o thread.o tls.o utils.o -L../install/lib -L/usr/lib -lnng -lmbedtls -lmbedx509 -lmbedcrypto -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdAormy/R.INSTALL1606dc14a3acc1/nanonext/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-nanonext/00new/nanonext/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nanonext) begin installing package ‘mirai’ * installing *source* package ‘targets’ ... ** package ‘targets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (targets) * installing *source* package ‘mirai’ ... ** package ‘mirai’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirai) begin installing package ‘crew’ * installing *source* package ‘crew’ ... ** package ‘crew’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crew) * installing *source* package ‘paws.storage’ ... ** package ‘paws.storage’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.storage) * installing *source* package ‘SpaDES.tools’ ... ** package ‘SpaDES.tools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQMIBN3/R.INSTALL161aaa542af33e/SpaDES.tools/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c duplicated.cpp -o duplicated.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c runif.cpp -o runif.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o SpaDES.tools.so RcppExports.o duplicated.o runif.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQMIBN3/R.INSTALL161aaa542af33e/SpaDES.tools/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-SpaDES.tools/00new/SpaDES.tools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpaDES.tools) * installing *source* package ‘GpGp’ ... ** package ‘GpGp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn65u9q/R.INSTALL1606ac68cb57ba/GpGp/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_mult.cpp -o matrix_mult.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o In file included from covmatrix_funs.h:9, from onepass.h:8, from vecchia_loglik_grad_info.cpp:8: covmatrix_funs_01.h: In function ‘arma::cube d_exponential_isotropic(arma::vec, arma::mat)’: covmatrix_funs_01.h:108:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 108 | for(int j=0; j linking system library * libzmq without DRAFT API found -> disabling crash monitor feature ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn0ZC7P/R.INSTALL1612b220a6467/clustermq/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -isystem /usr/include/mit-krb5 -I/usr/include/pgm-5.3 -I/usr/include/libxml2 -I/usr/include/x86_64-linux-gnu -fPIC -Icppzmq -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CMQMaster.cpp -o CMQMaster.o In file included from CMQMaster.cpp:2: CMQMaster.h: In member function ‘bool CMQMaster::close(int)’: CMQMaster.h:65:26: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 65 | auto n = recv_multipart(sock, std::back_inserter(msgs)); | ^ CMQMaster.h:62:21: warning: unused variable ‘rc’ [-Wunused-variable] 62 | int rc = zmq::poll(pitems, time_left); | ^~ CMQMaster.h: In member function ‘SEXPREC* CMQMaster::recv(int)’: CMQMaster.h:107:18: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 107 | auto n = recv_multipart(sock, std::back_inserter(msgs)); | ^ CMQMaster.h:109:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | } while(data_offset >= msgs.size()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~ CMQMaster.h: In member function ‘void CMQMaster::proxy_submit_cmd(SEXP, int)’: CMQMaster.h:162:14: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 162 | auto n = recv_multipart(sock, std::back_inserter(msgs)); | ^ CMQMaster.h: In member function ‘int CMQMaster::register_peer(std::vector&)’: CMQMaster.h:344:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 344 | if (msgs.size() > ++cur_i) { | ~~~~~~~~~~~~^~~~~~~~~ CMQMaster.h:359:26: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, CMQMaster::worker_t>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 359 | if (peers.size() > prev_size && w.status == wlife_t::active) { | ~~~~~~~~~~~~~^~~~~~~~~~~ CMQMaster.h:364:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 364 | if (msgs.size() > cur_i+2) { | ~~~~~~~~~~~~^~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -isystem /usr/include/mit-krb5 -I/usr/include/pgm-5.3 -I/usr/include/libxml2 -I/usr/include/x86_64-linux-gnu -fPIC -Icppzmq -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CMQProxy.cpp -o CMQProxy.o In file included from CMQProxy.h:3, from CMQProxy.cpp:2: CMQMaster.h: In member function ‘bool CMQMaster::close(int)’: CMQMaster.h:65:26: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 65 | auto n = recv_multipart(sock, std::back_inserter(msgs)); | ^ CMQMaster.h:62:21: warning: unused variable ‘rc’ [-Wunused-variable] 62 | int rc = zmq::poll(pitems, time_left); | ^~ CMQMaster.h: In member function ‘SEXPREC* CMQMaster::recv(int)’: CMQMaster.h:107:18: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 107 | auto n = recv_multipart(sock, std::back_inserter(msgs)); | ^ CMQMaster.h:109:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | } while(data_offset >= msgs.size()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~ CMQMaster.h: In member function ‘void CMQMaster::proxy_submit_cmd(SEXP, int)’: CMQMaster.h:162:14: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 162 | auto n = recv_multipart(sock, std::back_inserter(msgs)); | ^ CMQMaster.h: In member function ‘int CMQMaster::register_peer(std::vector&)’: CMQMaster.h:344:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 344 | if (msgs.size() > ++cur_i) { | ~~~~~~~~~~~~^~~~~~~~~ CMQMaster.h:359:26: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, CMQMaster::worker_t>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 359 | if (peers.size() > prev_size && w.status == wlife_t::active) { | ~~~~~~~~~~~~~^~~~~~~~~~~ CMQMaster.h:364:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 364 | if (msgs.size() > cur_i+2) { | ~~~~~~~~~~~~^~~~~~~~~ CMQProxy.h: In member function ‘SEXPREC* CMQProxy::proxy_receive_cmd()’: CMQProxy.h:54:14: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 54 | auto n = recv_multipart(to_master, std::back_inserter(msgs)); | ^ CMQProxy.h:55:14: warning: unused variable ‘status’ [-Wunused-variable] 55 | auto status = msg2wlife_t(msgs[1]); | ^~~~~~ CMQProxy.h: In member function ‘bool CMQProxy::process_one()’: CMQProxy.h:116:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 139 | for (int i=0; i::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mrgsolve_init.cpp -o mrgsolve_init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c odeproblem.cpp -o odeproblem.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o mrgsolve.so LSODA.o RcppExports.o dataobject.o datarecord.o devtran.o housemodel-mread-source.o mrgsolve.o mrgsolve_init.o odeproblem.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEhzUSr/R.INSTALL1606cd7ff4f34/mrgsolve/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-mrgsolve/00new/mrgsolve/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mrgsolve) * installing *source* package ‘pak’ ... ** package ‘pak’ successfully unpacked and MD5 sums checked ** using staged installation ** Running ./configure ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src' Current platform: x86_64-pc-linux-gnu Build platform: Target platform: Compiling R6 Compiling cli using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/cli/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ansi.c -o ansi.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diff.c -o diff.o diff.c: In function ‘clic_diff_chr’: diff.c:104:3: warning: ‘sn’ may be used uninitialized [-Wmaybe-uninitialized] 104 | SET_VECTOR_ELT(result, 0, allocVector(INTSXP, sn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff.c:85:7: note: ‘sn’ was declared here 85 | int sn; | ^~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glue.c -o glue.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c inst.c -o inst.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keypress-unix.c -o keypress-unix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keypress-win.c -o keypress-win.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keypress.c -o keypress.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md5.c -o md5.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c progress-altrep.c -o progress-altrep.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c progress.c -o progress.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha1.c -o sha1.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha256.c -o sha256.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thread.c -o thread.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tty.c -o tty.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utf8.c -o utf8.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vt.c -o vt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtparse.c -o vtparse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtparse_table.c -o vtparse_table.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c win-utf8.c -o win-utf8.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winfiles.c -o winfiles.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/cli/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/cli/libs Compiling curl Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu Using PKG_LIBS=-lcurl using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/curl/src' rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c callbacks.c -o callbacks.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c curl.c -o curl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c download.c -o download.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c escape.c -o escape.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fetch.c -o fetch.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c findport.c -o findport.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c form.c -o form.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getdate.c -o getdate.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c handle.c -o handle.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ieproxy.c -o ieproxy.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interrupt.c -o interrupt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c multi.c -o multi.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nslookup.c -o nslookup.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c options.c -o options.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reflist.c -o reflist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split.c -o split.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ssl.c -o ssl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c typechecking.c -o typechecking.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c version.c -o version.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winidn.c -o winidn.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c writer.c -o writer.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/curl/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/curl/libs Compiling filelock using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/filelock/src' rm -f filelock.so init.o filelock-unix.o locklist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c filelock-unix.c -o filelock-unix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c locklist.c -o locklist.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o filelock.so init.o filelock-unix.o locklist.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/filelock/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/filelock/libs Compiling jsonlite using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/jsonlite/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_array.c -o collapse_array.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_object.c -o collapse_object.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_pretty.c -o collapse_pretty.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c escape_chars.c -o escape_chars.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c integer64_to_na.c -o integer64_to_na.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_datelist.c -o is_datelist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_recordlist.c -o is_recordlist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_scalarlist.c -o is_scalarlist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modp_numtoa.c -o modp_numtoa.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c null_to_na.c -o null_to_na.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c num_to_char.c -o num_to_char.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parse.c -o parse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prettify.c -o prettify.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c push_parser.c -o push_parser.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-base64.c -o r-base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c row_collapse.c -o row_collapse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transpose_list.c -o transpose_list.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validate.c -o validate.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl.c -o yajl/yajl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_buf.c -o yajl/yajl_buf.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_encode.c -o yajl/yajl_encode.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_gen.c -o yajl/yajl_gen.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_lex.c -o yajl/yajl_lex.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_parser.c -o yajl/yajl_parser.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/jsonlite/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/jsonlite/libs in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” Compiling lpSolve using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/lpSolve/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colamd.c -o colamd.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c commonlib.c -o commonlib.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hbio.c -o hbio.o In file included from /usr/include/stdio.h:906, from hbio.h:4, from hbio.c:215: In function ‘fprintf’, inlined from ‘writeHB_mat_double’ at hbio.c:832:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘out_file’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ hbio.c: In function ‘writeHB_mat_double’: hbio.c:762:11: note: ‘out_file’ was declared here 762 | FILE *out_file; | ^~~~~~~~ In function ‘fprintf’, inlined from ‘writeHB_mat_char’ at hbio.c:1422:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘out_file’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ hbio.c: In function ‘writeHB_mat_char’: hbio.c:1357:11: note: ‘out_file’ was declared here 1357 | FILE *out_file; | ^~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ini.c -o ini.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isfixedvar.c -o isfixedvar.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_Hash.c -o lp_Hash.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_LUSOL.c -o lp_LUSOL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_MDO.c -o lp_MDO.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_MPS.c -o lp_MPS.o lp_MPS.c: In function ‘MPS_getnameidx.constprop’: lp_MPS.c:1532:9: warning: ‘in’ may be used uninitialized [-Wmaybe-uninitialized] 1532 | return( in ); | ^ lp_MPS.c:1502:7: note: ‘in’ declared here 1502 | int in; | ^~ In file included from /usr/include/stdio.h:906, from commonlib.h:5, from lp_MPS.c:5: In function ‘fprintf’, inlined from ‘MPS_writeBAS’ at lp_MPS.c:1687:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ lp_MPS.c: In function ‘MPS_writeBAS’: lp_MPS.c:1664:11: note: ‘output’ was declared here 1664 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_SOS.c -o lp_SOS.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_crash.c -o lp_crash.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_lib.c -o lp_lib.o lp_lib.c: In function ‘set_BFP’: lp_lib.c:5185:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5185 | lp->bfp_compatible = (BFPbool_lpintintint *) | ^ lp_lib.c:5191:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5191 | lp->bfp_name = (BFPchar *) | ^ lp_lib.c:5193:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5193 | lp->bfp_free = (BFP_lp *) | ^ lp_lib.c:5195:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5195 | lp->bfp_resize = (BFPbool_lpint *) | ^ lp_lib.c:5197:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5197 | lp->bfp_nonzeros = (BFPint_lpbool *) | ^ lp_lib.c:5199:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5199 | lp->bfp_memallocated = (BFPint_lp *) | ^ lp_lib.c:5201:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5201 | lp->bfp_restart = (BFPbool_lp *) | ^ lp_lib.c:5203:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5203 | lp->bfp_mustrefactorize = (BFPbool_lp *) | ^ lp_lib.c:5205:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5205 | lp->bfp_preparefactorization = (BFPint_lp *) | ^ lp_lib.c:5207:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5207 | lp->bfp_factorize = (BFPint_lpintintboolbool *) | ^ lp_lib.c:5209:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5209 | lp->bfp_finishupdate = (BFPbool_lpbool *) | ^ lp_lib.c:5211:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5211 | lp->bfp_ftran_normal = (BFP_lprealint *) | ^ lp_lib.c:5213:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5213 | lp->bfp_ftran_prepare = (BFP_lprealint *) | ^ lp_lib.c:5215:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5215 | lp->bfp_btran_normal = (BFP_lprealint *) | ^ lp_lib.c:5217:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5217 | lp->bfp_status = (BFPint_lp *) | ^ lp_lib.c:5219:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5219 | lp->bfp_implicitslack = (BFPbool_lp *) | ^ lp_lib.c:5221:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5221 | lp->bfp_indexbase = (BFPint_lp *) | ^ lp_lib.c:5223:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5223 | lp->bfp_rowoffset = (BFPint_lp *) | ^ lp_lib.c:5225:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5225 | lp->bfp_pivotmax = (BFPint_lp *) | ^ lp_lib.c:5227:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5227 | lp->bfp_init = (BFPbool_lpintintchar *) | ^ lp_lib.c:5229:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5229 | lp->bfp_pivotalloc = (BFPbool_lpint *) | ^ lp_lib.c:5231:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5231 | lp->bfp_colcount = (BFPint_lp *) | ^ lp_lib.c:5233:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5233 | lp->bfp_canresetbasis = (BFPbool_lp *) | ^ lp_lib.c:5235:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5235 | lp->bfp_finishfactorization = (BFP_lp *) | ^ lp_lib.c:5237:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5237 | lp->bfp_updaterefactstats = (BFP_lp *) | ^ lp_lib.c:5239:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5239 | lp->bfp_prepareupdate = (BFPlreal_lpintintreal *) | ^ lp_lib.c:5241:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5241 | lp->bfp_pivotRHS = (BFPreal_lplrealreal *) | ^ lp_lib.c:5243:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5243 | lp->bfp_btran_double = (BFP_lprealintrealint *) | ^ lp_lib.c:5245:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5245 | lp->bfp_efficiency = (BFPreal_lp *) | ^ lp_lib.c:5247:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5247 | lp->bfp_pivotvector = (BFPrealp_lp *) | ^ lp_lib.c:5249:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5249 | lp->bfp_pivotcount = (BFPint_lp *) | ^ lp_lib.c:5251:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5251 | lp->bfp_refactcount = (BFPint_lpint *) | ^ lp_lib.c:5253:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5253 | lp->bfp_isSetI = (BFPbool_lp *) | ^ lp_lib.c:5255:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5255 | lp->bfp_findredundant = (BFPint_lpintrealcbintint *) | ^ lp_lib.c: In function ‘set_XLI’: lp_lib.c:5447:38: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5447 | lp->xli_compatible = (XLIbool_lpintintint *) | ^ lp_lib.c:5453:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5453 | lp->xli_name = (XLIchar *) | ^ lp_lib.c:5455:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5455 | lp->xli_readmodel = (XLIbool_lpcharcharcharint *) | ^ lp_lib.c:5457:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 5457 | lp->xli_writemodel = (XLIbool_lpcharcharbool *) | ^ lp_lib.c: In function ‘set_outputfile’: lp_lib.c:201:5: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 201 | set_outputstream(lp, output); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ lp_lib.c:197:11: note: ‘output’ was declared here 197 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_matrix.c -o lp_matrix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_mipbb.c -o lp_mipbb.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_params.c -o lp_params.o lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] 266 | { | ^ lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] lp_params.c:266:1: warning: missing braces around initializer [-Wmissing-braces] gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_presolve.c -o lp_presolve.o lp_presolve.c: In function ‘presolve_debugmap’: lp_presolve.c:486:51: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 486 | int colnr, ix, ie, nx, jx, je, *cols, *rows, n; | ^ lp_presolve.c: In function ‘presolve_colfixdual’: lp_presolve.c:2016:18: warning: variable ‘isMI’ set but not used [-Wunused-but-set-variable] 2016 | MYBOOL hasOF, isMI, isDualFREE = TRUE; | ^~~~ lp_presolve.c: In function ‘presolve_coldominance01’: lp_presolve.c:3849:34: warning: variable ‘je’ set but not used [-Wunused-but-set-variable] 3849 | int i, ii, ib, ie, n, jb, je, jx, jj, item, item2, | ^~ lp_presolve.c: In function ‘presolve_columns’: lp_presolve.c:4622:46: warning: variable ‘item’ set but not used [-Wunused-but-set-variable] 4622 | status = RUNNING, ix, j, countNZ, item; | ^~~~ lp_presolve.c:4615:31: warning: variable ‘unbounded’ set but not used [-Wunused-but-set-variable] 4615 | MYBOOL candelete, isOFNZ, unbounded, | ^~~~~~~~~ lp_presolve.c: In function ‘presolve_rows’: lp_presolve.c:5060:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 5060 | if(!presolve_fixSOS1(psdata, j, Value1, &iConRemove, &iVarFixed)) | ^~ lp_presolve.c:5062:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 5062 | psdata->forceupdate = TRUE; | ^~~~~~ In file included from /usr/include/stdio.h:906, from commonlib.h:5, from lp_presolve.c:36: In function ‘fprintf’, inlined from ‘presolve_debugdump’ at lp_presolve.c:3585:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ lp_presolve.c: In function ‘presolve_debugdump’: lp_presolve.c:3558:11: note: ‘output’ was declared here 3558 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_price.c -o lp_price.o lp_price.c: In function ‘compareImprovementVar’: lp_price.c:49:7: warning: variable ‘candidatecolno’ set but not used [-Wunused-but-set-variable] 49 | candidatecolno, candidatevarno = candidate->varno; | ^~~~~~~~~~~~~~ lp_price.c:48:7: warning: variable ‘currentcolno’ set but not used [-Wunused-but-set-variable] 48 | int currentcolno, currentvarno = current->varno, | ^~~~~~~~~~~~ lp_price.c: In function ‘compareSubstitutionVar’: lp_price.c:162:10: warning: variable ‘candidatecolno’ set but not used [-Wunused-but-set-variable] 162 | candidatecolno, candidatevarno = candidate->varno; | ^~~~~~~~~~~~~~ lp_price.c:161:10: warning: variable ‘currentcolno’ set but not used [-Wunused-but-set-variable] 161 | int currentcolno, currentvarno = current->varno, | ^~~~~~~~~~~~ lp_price.c: In function ‘partial_findBlocks’: lp_price.c:1560:15: warning: variable ‘blockdata’ set but not used [-Wunused-but-set-variable] 1560 | partialrec *blockdata; | ^~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_pricePSE.c -o lp_pricePSE.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_report.c -o lp_report.o In file included from /usr/include/stdio.h:906, from lp_report.c:19: In function ‘fprintf’, inlined from ‘REPORT_debugdump’ at lp_report.c:308:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ lp_report.c: In function ‘REPORT_debugdump’: lp_report.c:299:11: note: ‘output’ was declared here 299 | FILE *output; | ^~~~~~ lp_report.c: In function ‘REPORT_mat_mmsave’: lp_report.c:758:3: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized] 758 | mm_write_mtx_crd_size(output, n+kk, m, nz+(colndx == lp->var_basic ? 1 : 0)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lp_report.c:709:16: note: ‘output’ was declared here 709 | FILE *output; /* = stdout; */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_rlp.c -o lp_rlp.o In file included from lp_rlp.c:97: lp_rlp.h:1871:14: warning: ‘lp_yy_flex_realloc’ defined but not used [-Wunused-function] 1871 | static void *lp_yy_flex_realloc( void *ptr, lp_yy_size_t size ) | ^~~~~~~~~~~~~~~~~~ lp_rlp.h:1845:12: warning: ‘lp_yy_flex_strlen’ defined but not used [-Wunused-function] 1845 | static int lp_yy_flex_strlen( lp_yyconst char *s ) | ^~~~~~~~~~~~~~~~~ lp_rlp.h:1797:13: warning: ‘lp_yy_fatal_error’ defined but not used [-Wunused-function] 1797 | static void lp_yy_fatal_error( lp_yyconst char msg[] ) | ^~~~~~~~~~~~~~~~~ lp_rlp.h:1353:13: warning: ‘lp_yyunput’ defined but not used [-Wunused-function] 1353 | static void lp_yyunput( int c, register char *lp_yy_bp ) | ^~~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_scale.c -o lp_scale.o lp_scale.c: In function ‘CurtisReidScales’: lp_scale.c:150:24: warning: variable ‘ekm2’ set but not used [-Wunused-but-set-variable] 150 | qkm2, qkqkm1, ekm2, ekekm1, | ^~~~ lp_scale.c:150:10: warning: variable ‘qkm2’ set but not used [-Wunused-but-set-variable] 150 | qkm2, qkqkm1, ekm2, ekekm1, | ^~~~ lp_scale.c: In function ‘scale_columns’: lp_scale.c:632:16: warning: variable ‘colMax’ set but not used [-Wunused-but-set-variable] 632 | int i,j, colMax, nz; | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_simplex.c -o lp_simplex.o lp_simplex.c: In function ‘dualloop’: lp_simplex.c:983:10: warning: variable ‘epsvalue’ set but not used [-Wunused-but-set-variable] 983 | REAL epsvalue, xviolated, cviolated, | ^~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_utils.c -o lp_utils.o lp_utils.c: In function ‘searchFor’: lp_utils.c:547:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 547 | if(absolute) | ^~ lp_utils.c:549:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 549 | while((beginPos < endPos) && (match != target)) { | ^~~~~ lp_utils.c: In function ‘compareLink’: lp_utils.c:948:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 948 | if(test == 0) | ^~ lp_utils.c:950:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 950 | if(test == 0) | ^~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lp_wlp.c -o lp_wlp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lpslink56.c -o lpslink56.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lusol.c -o lusol.o In file included from lusol.c:748: lusol1.h: In function ‘LU1FAC’: lusol1.h:3359:34: warning: variable ‘TSP’ set but not used [-Wunused-but-set-variable] 3359 | MYBOOL KEEPLU, TCP, TPP, TRP, TSP; | ^~~ lusol1.h:3359:29: warning: variable ‘TRP’ set but not used [-Wunused-but-set-variable] 3359 | MYBOOL KEEPLU, TCP, TPP, TRP, TSP; | ^~~ lusol1.h:3359:19: warning: variable ‘TCP’ set but not used [-Wunused-but-set-variable] 3359 | MYBOOL KEEPLU, TCP, TPP, TRP, TSP; | ^~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lusolio.c -o lusolio.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mmio.c -o mmio.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c myblas.c -o myblas.o myblas.c: In function ‘load_BLAS’: myblas.c:100:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 100 | BLAS_dscal = (BLAS_dscal_func *) my_GetProcAddress(hBLAS, BLAS_prec "scal"); | ^ myblas.c:101:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 101 | BLAS_dcopy = (BLAS_dcopy_func *) my_GetProcAddress(hBLAS, BLAS_prec "copy"); | ^ myblas.c:102:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 102 | BLAS_daxpy = (BLAS_daxpy_func *) my_GetProcAddress(hBLAS, BLAS_prec "axpy"); | ^ myblas.c:103:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 103 | BLAS_dswap = (BLAS_dswap_func *) my_GetProcAddress(hBLAS, BLAS_prec "swap"); | ^ myblas.c:104:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 104 | BLAS_ddot = (BLAS_ddot_func *) my_GetProcAddress(hBLAS, BLAS_prec "dot"); | ^ myblas.c:105:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 105 | BLAS_idamax = (BLAS_idamax_func *) my_GetProcAddress(hBLAS, "i" BLAS_prec "amax"); | ^ myblas.c:106:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 106 | BLAS_idamin = (BLAS_idamin_func *) my_GetProcAddress(hBLAS, "i" BLAS_prec "amin"); | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparselib.c -o sparselib.o sparselib.c: In function ‘dswapVector1’: sparselib.c:823:10: warning: variable ‘d’ set but not used [-Wunused-but-set-variable] 823 | int i, d, n; | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yacc_read.c -o yacc_read.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o lpSolve.so colamd.o commonlib.o hbio.o ini.o init.o isfixedvar.o lp_Hash.o lp_LUSOL.o lp_MDO.o lp_MPS.o lp_SOS.o lp_crash.o lp_lib.o lp_matrix.o lp_mipbb.o lp_params.o lp_presolve.o lp_price.o lp_pricePSE.o lp_report.o lp_rlp.o lp_scale.o lp_simplex.o lp_utils.o lp_wlp.o lpslink56.o lusol.o lusolio.o mmio.o myblas.o sparselib.o yacc_read.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/lpSolve/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/lpSolve/libs Compiling ps using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/ps/src' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -Wall px.c -o px gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api-common.c -o api-common.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extra.c -o extra.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy.c -o dummy.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error-codes.c -o error-codes.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c posix.c -o posix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api-posix.c -o api-posix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linux.c -o linux.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api-linux.c -o api-linux.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/ps/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/ps Compiling zip using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/zip/src' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c miniz.c -o miniz.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rzip.c -o rzip.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zip.c -o zip.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unixutils.c -o unixutils.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/zip/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/zip Compiling processx using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/processx/src' gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -Wall tools/px.c -o tools/px gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock gcc-13 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c client.c -o client.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -shared -L"/home/hornik/tmp/R-d-gcc-13/lib" -Wl,-O1 -o client.so base64.o client.o errors.o \ -L"/home/hornik/tmp/R-d-gcc-13/lib" -lR if [ -n "" ]; then \ echo Removing libR.so dependency from client.so; \ patchelf --remove-needed libR.so client.so; \ fi gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c poll.c -o poll.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c processx-connection.c -o processx-connection.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c processx-vector.c -o processx-vector.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c create-time.c -o create-time.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/childlist.c -o unix/childlist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/connection.c -o unix/connection.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/processx.c -o unix/processx.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/sigchld.c -o unix/sigchld.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/utils.c -o unix/utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c unix/named_pipe.c -o unix/named_pipe.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/processx/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/processx Compiling callr Compiling desc Compiling pkgbuild Compiling pkgcache using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/pkgcache/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lib.c -o lib.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winfiles.c -o winfiles.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o pkgcache.so errors.o init.o lib.o winfiles.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src/library/pkgcache/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak/library/pkgcache/libs Compiling pkgsearch Compiling pkgdepends make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGFyqBs/R.INSTALL1606f1a194bb4/pak/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN/Library/00LOCK-pak/00new/pak ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pak) * installing *source* package ‘GPvecchia’ ... ** package ‘GPvecchia’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3qsQ1j/R.INSTALL1621382ae0e272/GPvecchia/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Esqe.cpp -o Esqe.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Matern.cpp -o Matern.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MaxMin.cpp -o MaxMin.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c U_NZentries.cpp -o U_NZentries.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dist.cpp -o dist.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fastTree.cpp -o fastTree.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c getMatCovFromFactor.cpp -o getMatCovFromFactor.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ic0.cpp -o ic0.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o GPvecchia.so Esqe.o Matern.o MaxMin.o RcppExports.o U_NZentries.o dist.o fastTree.o getMatCovFromFactor.o ic0.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3qsQ1j/R.INSTALL1621382ae0e272/GPvecchia/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-GPvecchia/00new/GPvecchia/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GPvecchia) checking codetools_0.2-20.tar.gz ... checking ascii_2.6.tar.gz ... checking depcache_0.1-2.tar.gz ... checking fc_0.1.0.tar.gz ... checking foreach_1.5.2.tar.gz ... checking GeoModels_1.1.9.tar.gz ... checking globals_0.16.3.tar.gz ... checking lintr_3.1.2.tar.gz ... checking manipulateWidget_0.11.1.tar.gz ... checking markmyassignment_0.8.8.tar.gz ... checking MonetDB.R_2.0.0.tar.gz ... checking MonteCarlo_1.0.6.tar.gz ... checking multcomp_1.4-25.tar.gz ... checking NMF_0.27.tar.gz ... checking packager_1.15.2.tar.gz ... checking pkgmaker_0.32.10.tar.gz ... checking PopED_0.6.0.tar.gz ... checking pryr_0.1.6.tar.gz ... checking roxyglobals_1.0.0.tar.gz ... checking simmer_4.4.6.3.tar.gz ... checking sloop_1.0.1.tar.gz ... checking svTools_0.9-5.tar.gz ... checking targets_1.6.0.tar.gz ... checking ASGS.foyer_0.3.3.tar.gz ... checking BBmisc_1.13.tar.gz ... checking BigVAR_1.1.2.tar.gz ... checking cmR_1.1.tar.gz ... checking cricketdata_0.2.3.tar.gz ... checking incR_2.1.0.tar.gz ... checking GREENeR_1.0.0.tar.gz ... checking flexmix_2.3-19.tar.gz ... checking peperr_1.5.tar.gz ... checking R.methodsS3_1.8.2.tar.gz ... checking processx_3.8.4.tar.gz ... checking remotes_2.5.0.tar.gz ... checking prettyunits_1.2.0.tar.gz ... checking xfun_0.43.tar.gz ... checking gitcreds_0.1.2.tar.gz ... checking RSiena_1.4.7.tar.gz ... checking WRS2_1.1-6.tar.gz ... checking pkgdepends_0.7.2.tar.gz ... checking mlr3_0.18.0.tar.gz ... checking knitr_1.45.tar.gz ... checking SpaDES.core_2.0.3.tar.gz ... Depends: Package: codetools Depends: R (>= 2.1) Timings: user system elapsed codetools 24.902 2.902 28.373 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 8 35 Check results summary: codetools ... OK rdepends_ascii ... OK rdepends_ASGS.foyer ... OK rdepends_BBmisc ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_BigVAR ... NOTE * checking C++ specification ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_cmR ... OK rdepends_cricketdata ... OK rdepends_depcache ... OK rdepends_fc ... NOTE * checking LazyData ... NOTE rdepends_flexmix ... OK rdepends_foreach ... OK rdepends_GeoModels ... OK rdepends_gitcreds ... OK rdepends_globals ... OK rdepends_GREENeR ... OK rdepends_incR ... OK rdepends_knitr ... OK rdepends_lintr ... OK rdepends_manipulateWidget ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_markmyassignment ... OK rdepends_mlr3 ... OK rdepends_MonetDB.R ... OK rdepends_MonteCarlo ... OK rdepends_multcomp ... OK rdepends_NMF ... OK rdepends_packager ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_peperr ... OK rdepends_pkgdepends ... OK rdepends_pkgmaker ... NOTE * checking Rd files ... [1s/1s] NOTE * checking HTML version of manual ... [3s/4s] NOTE rdepends_PopED ... OK rdepends_prettyunits ... OK rdepends_processx ... OK rdepends_pryr ... OK rdepends_R.methodsS3 ... OK rdepends_remotes ... OK rdepends_roxyglobals ... OK rdepends_RSiena ... OK rdepends_simmer ... OK rdepends_sloop ... NOTE * checking LazyData ... NOTE rdepends_SpaDES.core ... NOTE * checking package dependencies ... NOTE rdepends_svTools ... OK rdepends_targets ... OK rdepends_WRS2 ... OK rdepends_xfun ... OK