* using log directory ‘/srv/hornik/tmp/CRAN_pretest/cocopack.Rcheck’ * using R Under development (unstable) (2025-02-17 r87739) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘cocopack/DESCRIPTION’ ... OK * this is package ‘cocopack’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Colin Conwell ’ New submission Non-FOSS package license (file LICENSE) Possibly misspelled words in DESCRIPTION: ggplot (8:5) Size of tarball: 7496936 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .github .vscode These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. CRAN-pack does not know about .github .vscode * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘cocopack’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... WARNING Invalid license file pointers: LICENSE * checking top-level files ... NOTE Non-standard files/directories found at top level: ‘_pkgdown.yml’ ‘diy’ ‘docs’ ‘hex-logo.png’ ‘litr’ ‘pkgdown’ ‘xyz’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] NOTE flip_names: no visible global function definition for ‘%>%’ flip_names: no visible binding for global variable ‘keys’ flip_names: no visible binding for global variable ‘values’ flip_names: no visible binding for global variable ‘temp_keys’ label_significance: no visible global function definition for ‘%>%’ label_significance: no visible binding for global variable ‘ns_label’ label_significance: no visible global function definition for ‘vars’ label_significance: no visible global function definition for ‘ends_with’ read_csv_add_name: no visible global function definition for ‘%>%’ read_parquet_add_name: no visible global function definition for ‘%>%’ remove_log_label : remove_label: no visible global function definition for ‘%>%’ remove_log_label: no visible global function definition for ‘%>%’ remove_log_label: no visible binding for global variable ‘remove_log’ run_bootstrap: no visible global function definition for ‘%>%’ run_bootstrap: no visible global function definition for ‘ungroup’ run_bootstrap: no visible global function definition for ‘group_by’ run_bootstrap: no visible global function definition for ‘across’ run_bootstrap: no visible global function definition for ‘all_of’ run_bootstrap: no visible global function definition for ‘nest’ run_bootstrap: no visible binding for global variable ‘data’ run_bootstrap: no visible binding for global variable ‘bootstrap_results’ run_bootstrap: no visible binding for global variable ‘bootstrap_ci’ run_bootstrap: no visible global function definition for ‘case_when’ run_bootstrap: no visible binding for global variable ‘signif_alpha’ run_bootstrap: no visible binding for global variable ‘signif_label’ run_bootstrap: no visible binding for global variable ‘prop_below_zero’ run_bootstrap: no visible binding for global variable ‘prop_above_zero’ run_bootstrap: no visible binding for global variable ‘count_above_zero’ run_bootstrap: no visible binding for global variable ‘count_below_zero’ run_bootstrap: no visible binding for global variable ‘n_bootstraps’ run_bootstrap: no visible global function definition for ‘unnest’ run_bootstrap: no visible global function definition for ‘row_number’ spearman_boot: no visible global function definition for ‘%>%’ spearman_boot: no visible global function definition for ‘rename’ spearman_boot: no visible binding for global variable ‘boot_stat’ spearman_boot: no visible binding for global variable ‘boot_lower_ci’ spearman_boot: no visible binding for global variable ‘boot_upper_ci’ view_ggplot2_shapes: no visible global function definition for ‘%>%’ view_ggplot2_shapes: no visible binding for global variable ‘x’ view_ggplot2_shapes: no visible binding for global variable ‘y’ view_ggplot2_shapes: no visible binding for global variable ‘shape’ Undefined global functions or variables: %>% across all_of boot_lower_ci boot_stat boot_upper_ci bootstrap_ci bootstrap_results case_when count_above_zero count_below_zero data ends_with group_by keys n_bootstraps nest ns_label prop_above_zero prop_below_zero remove_log rename row_number shape signif_alpha signif_label temp_keys ungroup unnest values vars x y Consider adding importFrom("utils", "data") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 4 NOTEs