downloading reverse dependencies ... downloading biospear_1.0.2.tar.gz ... ok downloading demography_2.0.tar.gz ... ok downloading joineRML_0.4.7.tar.gz ... ok downloading L2E_2.0.tar.gz ... ok downloading logcondiscr_1.0.6.tar.gz ... ok downloading RPPASPACE_1.0.10.tar.gz ... ok downloading rTwig_1.4.0.tar.gz ... ok downloading vital_1.1.0.tar.gz ... ok downloading DPQ_0.5-9.tar.gz ... ok downloading mev_1.17.tar.gz ... ok downloading schumaker_1.2.1.tar.gz ... ok installing dependencies ‘bindrcpp’, ‘cobs’, ‘colourvalues’, ‘demography’, ‘DPQmpfr’, ‘ftsa’, ‘grplasso’, ‘HMDHFDplus’, ‘JM’, ‘joineR’, ‘mvPot’, ‘plsRcox’, ‘rmatio’, ‘survAUC’, ‘tidytable’ also installing the dependencies ‘plsRglm’, ‘risksetROC’, ‘survcomp’, ‘bindr’, ‘DPQ’ begin installing package ‘plsRglm’ begin installing package ‘risksetROC’ begin installing package ‘survcomp’ begin installing package ‘bindr’ begin installing package ‘DPQ’ begin installing package ‘grplasso’ begin installing package ‘survAUC’ begin installing package ‘ftsa’ begin installing package ‘HMDHFDplus’ begin installing package ‘JM’ begin installing package ‘joineR’ begin installing package ‘rmatio’ begin installing package ‘tidytable’ begin installing package ‘colourvalues’ begin installing package ‘mvPot’ begin installing package ‘cobs’ * installing *source* package ‘bindr’ ... ** this is package ‘bindr’ version ‘0.1.2’ ** package ‘bindr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bindr) begin installing package ‘bindrcpp’ * installing *source* package ‘grplasso’ ... ** this is package ‘grplasso’ version ‘0.4-7’ ** package ‘grplasso’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grplasso) * installing *source* package ‘mvPot’ ... ** this is package ‘mvPot’ version ‘0.1.7’ ** package ‘mvPot’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprjB2o7/R.INSTALL3aeb215c751cb1/mvPot/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mvnCppAdaptedSTL.cpp -o mvnCppAdaptedSTL.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mvPot.so mvnCppAdaptedSTL.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprjB2o7/R.INSTALL3aeb215c751cb1/mvPot/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvPot/00new/mvPot/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvPot) * installing *source* package ‘HMDHFDplus’ ... ** this is package ‘HMDHFDplus’ version ‘2.0.6’ ** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HMDHFDplus) * installing *source* package ‘risksetROC’ ... ** this is package ‘risksetROC’ version ‘1.0.4.1’ ** package ‘risksetROC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (risksetROC) * installing *source* package ‘tidytable’ ... ** this is package ‘tidytable’ version ‘0.11.2’ ** package ‘tidytable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidytable) * installing *source* package ‘joineR’ ... ** this is package ‘joineR’ version ‘1.2.8’ ** package ‘joineR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (joineR) * installing *source* package ‘cobs’ ... ** this is package ‘cobs’ version ‘1.3-9-1’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprPyg88/R.INSTALL3aeb235a423d63/cobs/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SR.c -o SR.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o In file included from SR.h:1, from init.c:9: nrutil.h:7:15: warning: ‘sqrarg’ defined but not used [-Wunused-variable] 7 | static double sqrarg; | ^~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nrutil.c -o nrutil.o In file included from nrutil.c:6: nrutil.h:7:15: warning: ‘sqrarg’ defined but not used [-Wunused-variable] 7 | static double sqrarg; | ^~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c splines.c -o splines.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cobs.so SR.o init.o nrutil.o splines.o -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprPyg88/R.INSTALL3aeb235a423d63/cobs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cobs/00new/cobs/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cobs) * installing *source* package ‘survcomp’ ... ** this is package ‘survcomp’ version ‘1.58.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPBhk2A/R.INSTALL3aeaf7132be98/survcomp/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concordance.index.c -o concordance.index.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o foo_mrmr_ensemble_surv.cpp: In function ‘double get_correlation_ensemble(double*, int*, int, int, int)’: foo_mrmr_ensemble_surv.cpp:12:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 12 | for( unsigned int i=0; i< size; ++i ) { | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:22:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 22 | for( unsigned int i=0; i< size; ++i ) { | ~^~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:40:16: warning: ISO C++ forbids variable length array ‘res_ch’ [-Wvla] 40 | double res_ch[lenStrat]; | ^~~~~~ foo_mrmr_ensemble_surv.cpp:41:16: warning: ISO C++ forbids variable length array ‘res_dh’ [-Wvla] 41 | double res_dh[lenStrat]; | ^~~~~~ foo_mrmr_ensemble_surv.cpp:48:21: warning: ISO C++ forbids variable length array ‘ixs’ [-Wvla] 48 | int ixs[lenStrat]; | ^~~ foo_mrmr_ensemble_surv.cpp:64:24: warning: ISO C++ forbids variable length array ‘xs’ [-Wvla] 64 | double xs[Ns]; | ^~ foo_mrmr_ensemble_surv.cpp:72:21: warning: ISO C++ forbids variable length array ‘cls’ [-Wvla] 72 | int cls[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:80:24: warning: ISO C++ forbids variable length array ‘sts’ [-Wvla] 80 | double sts[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:88:21: warning: ISO C++ forbids variable length array ‘ses’ [-Wvla] 88 | int ses[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:96:24: warning: ISO C++ forbids variable length array ‘weightss’ [-Wvla] 96 | double weightss[Ns]; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:104:24: warning: ISO C++ forbids variable length array ‘chs’ [-Wvla] 104 | double chs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:105:24: warning: ISO C++ forbids variable length array ‘dhs’ [-Wvla] 105 | double dhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:106:24: warning: ISO C++ forbids variable length array ‘uhs’ [-Wvla] 106 | double uhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:107:24: warning: ISO C++ forbids variable length array ‘rphs’ [-Wvla] 107 | double rphs[Ns]; | ^~~~ foo_mrmr_ensemble_surv.cpp:106:24: warning: variable ‘uhs’ set but not used [-Wunused-but-set-variable] 106 | double uhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:107:24: warning: variable ‘rphs’ set but not used [-Wunused-but-set-variable] 107 | double rphs[Ns]; | ^~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)’: foo_mrmr_ensemble_surv.cpp:202:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 202 | for(unsigned int i=0; i< size_subset; ++i){ | ~^~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:203:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 203 | for(unsigned int j=0; j< (nvar-1); ++j){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:214:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 214 | for(unsigned int i=0; i< nvar-1; ++i){ | ~^~~~~~~~ foo_mrmr_ensemble_surv.cpp:216:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 216 | for(unsigned int j=i+1; j< nvar-1; ++j){ | ~^~~~~~~~ foo_mrmr_ensemble_surv.cpp:191:24: warning: unused variable ‘msurv_x’ [-Wunused-variable] 191 | int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:191:34: warning: unused variable ‘ustrat_x’ [-Wunused-variable] 191 | int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_tree(tree&, tree&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:351:21: warning: unused variable ‘cnt_back’ [-Wunused-variable] 351 | int cnt_back=cnt2; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:286:14: warning: unused variable ‘nsub’ [-Wunused-variable] 286 | int nsub, *prev_sel,nsamples_boot=nsamples,*to_remove; | ^~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:393:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 393 | for(unsigned int k=0; k< rep_boot; ++k){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:396:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 396 | for(unsigned int i=1;i<= size_boot;++i){ | ~^~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:400:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | for( unsigned int i=0; i< size ; ++i ){ | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:401:49: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 401 | for( unsigned int j=0; j< size ; ++j ){ | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:412:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 412 | for(unsigned int i=0;i< rep_boot;++i){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:419:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 419 | for(unsigned int i=0;i< rep_boot;++i){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:387:17: warning: unused variable ‘mim’ [-Wunused-variable] 387 | double *mim, *boot_val, *mat_info; | ^~~ foo_mrmr_ensemble_surv.cpp: In function ‘double mrnet_onegene(double*, int, int, int*, int, int)’: foo_mrmr_ensemble_surv.cpp:448:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 448 | for(unsigned int j=0;j< nbvar; j++){ | ~^~~~~~~ foo_mrmr_ensemble_surv.cpp:437:22: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable] 437 | unsigned int jmax; | ^~~~ foo_mrmr_ensemble_surv.cpp:439:16: warning: unused variable ‘max_val’ [-Wunused-variable] 439 | double max_val=-1000; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘int verify_equivalentset_nparents(tree&, tree::pre_order_iterator, tree::pre_order_iterator, tree&, int)’: foo_mrmr_ensemble_surv.cpp:473:13: warning: ISO C++ forbids variable length array ‘vec_old’ [-Wvla] 473 | int vec_old[depth+1]; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:474:13: warning: ISO C++ forbids variable length array ‘mat_res’ [-Wvla] 474 | int mat_res [power((maxnsol+1),(depth))][depth+2]; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:474:13: warning: ISO C++ forbids variable length array ‘mat_res’ [-Wvla] foo_mrmr_ensemble_surv.cpp:476:13: warning: ISO C++ forbids variable length array ‘to_remove’ [-Wvla] 476 | int to_remove[number_leafs]; | ^~~~~~~~~ foo_mrmr_ensemble_surv.cpp:467:14: warning: unused variable ‘found’ [-Wunused-variable] 467 | bool found=false; | ^~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void mrmr_ensemble_one_gene_remove(tree&, tree::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:593:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 593 | for(unsigned int i=1;i<= nsamples;++i){ | ~^~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:596:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 596 | for( unsigned int i=0; i< n; ++i ){ | ~^~~ foo_mrmr_ensemble_surv.cpp:597:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 597 | for( unsigned int j=0; j< n; ++j ){ | ~^~~ foo_mrmr_ensemble_surv.cpp:604:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 604 | for(unsigned int k=0;k< max_elements ;++k){ | ~^~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:646:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 646 | for (unsigned int i=0;i<=max_depth;++i){ | ~^~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:654:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 654 | for(unsigned int k=0;k< n;++k){ | ~^~~ foo_mrmr_ensemble_surv.cpp:657:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 657 | for(unsigned int k=0;k<=max(res_tmp_new.depth(it_local),max_depth) ;++k){ | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:661:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 661 | for(unsigned int k=0;k< n;++k){ | ~^~~ foo_mrmr_ensemble_surv.cpp:578:31: warning: unused variable ‘nsamples_boot’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:578:55: warning: unused variable ‘tmp_val_max_ind’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:578:73: warning: unused variable ‘prev_sel_tmp’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:579:28: warning: unused variable ‘vec_sort’ [-Wunused-variable] 579 | double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:579:70: warning: variable ‘vec_local_max_sd’ set but not used [-Wunused-but-set-variable] 579 | double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr; | ^~~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: foo_mrmr_ensemble_surv.cpp:786:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 786 | for(unsigned int i=0;i< *npredn;++i){ | ~^~~~~~~~~ foo_mrmr_ensemble_surv.cpp:820:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 820 | for(unsigned int k=0;knext_out = uncomp_buf; | ~~~~~~~~~~~~~^~~~~~~~~~~~ matio/inflate.c:51:31: note: ‘uncomp_buf’ declared here 51 | mat_uint8_t comp_buf[512],uncomp_buf[512]; | ^~~~~~~~~~ matio/inflate.c:49:35: note: ‘z’ declared here 49 | InflateSkip(mat_t *mat, z_streamp z, int nbytes) | ~~~~~~~~~~^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat4.c -o matio/mat4.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat5.c -o matio/mat5.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat.c -o matio/mat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/matvar_cell.c -o matio/matvar_cell.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/matvar_struct.c -o matio/matvar_struct.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/read_data.c -o matio/read_data.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmatio.c -o rmatio.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYoVaqu/R.INSTALL3aeb1a193b97b5/rmatio/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rmatio/00new/rmatio/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmatio) * installing *source* package ‘demography’ ... ** this is package ‘demography’ version ‘2.0’ ** package ‘demography’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (demography) * installing *source* package ‘colourvalues’ ... ** this is package ‘colourvalues’ version ‘0.3.9’ ** package ‘colourvalues’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBuLCXj/R.INSTALL3aeb1d3ca600d8/colourvalues/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ColourValues.cpp -o ColourValues.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConvertColours.cpp -o ConvertColours.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c alpha.cpp -o alpha.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c format.cpp -o format.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c list.cpp -o list.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c palette_utils.cpp -o palette_utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c palettes.cpp -o palettes.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scale.cpp -o scale.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o colourvalues.so ColourValues.o ConvertColours.o RcppExports.o alpha.o format.o list.o palette_utils.o palettes.o scale.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBuLCXj/R.INSTALL3aeb1d3ca600d8/colourvalues/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-colourvalues/00new/colourvalues/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colourvalues) * installing *source* package ‘plsRcox’ ... ** this is package ‘plsRcox’ version ‘1.7.7’ ** package ‘plsRcox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsRcox) checking cobs_1.3-9-1.tar.gz ... checking biospear_1.0.2.tar.gz ... checking joineRML_0.4.7.tar.gz ... checking demography_2.0.tar.gz ... checking L2E_2.0.tar.gz ... checking logcondiscr_1.0.6.tar.gz ... checking RPPASPACE_1.0.10.tar.gz ... checking rTwig_1.4.0.tar.gz ... checking vital_1.1.0.tar.gz ... checking DPQ_0.5-9.tar.gz ... checking mev_1.17.tar.gz ... checking schumaker_1.2.1.tar.gz ... Depends: Package: cobs Imports: SparseM (>= 1.6), quantreg (>= 4.65), grDevices, graphics, splines, stats, methods Timings: user system elapsed cobs 76.137 6.66 84.898 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 10 Check results summary: cobs ... OK rdepends_biospear ... OK rdepends_demography ... OK rdepends_DPQ ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_joineRML ... OK rdepends_L2E ... OK rdepends_logcondiscr ... OK rdepends_mev ... OK rdepends_RPPASPACE ... OK rdepends_rTwig ... OK rdepends_schumaker ... OK rdepends_vital ... OK Check results changes: Package: biospear Check: CRAN incoming feasibility Old result: NOTE Package: L2E Check: CRAN incoming feasibility Old result: NOTE Package: logcondiscr Check: CRAN incoming feasibility Old result: NOTE Package: schumaker Check: CRAN incoming feasibility Old result: NOTE