* using log directory ‘/home/hornik/tmp/CRAN_special_donttest/cnefetools.Rcheck’
* using R Under development (unstable) (2026-03-29 r89739)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-15 (Debian 15.2.0-15) 15.2.0
    GNU Fortran (Debian 15.2.0-15) 15.2.0
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-03-30 18:44:19 UTC
* using option ‘--run-donttest’
* checking for file ‘cnefetools/DESCRIPTION’ ... OK
* this is package ‘cnefetools’ version ‘0.2.4’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Jorge Ubirajara Pedreira Junior <jorge.ubirajara@ufba.br>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Brasileiro (19:50)
  CNEFE (2:41, 18:60, 24:21)
  Cadastro (18:5)
  Enderecos (18:26)
  Estatistica (20:5)
  Estatisticos (18:46)
  Geografia (19:64)
  IBGE (20:18)
  Instituto (19:40)
  Nacional (18:14)
  dasymetric (23:34)
  de (18:23, 19:61)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2026-03-30 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cnefetools’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... [12s/24s] ERROR
Running examples in ‘cnefetools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cnefe_counts
> ### Title: Count CNEFE address species on a spatial grid
> ### Aliases: cnefe_counts
> 
> ### ** Examples
> 
> ## No test: 
> # Count addresses per H3 hexagon (resolution 9)
> hex_counts <- cnefe_counts(code_muni = 2929057)
ℹ Step 1/3: Ensuring ZIP and inspecting archive...
Downloading ZIP (timeout = 300s): https://ftp.ibge.gov.br/Cadastro_Nacional_de_Enderecos_para_Fins_Estatisticos/Censo_Demografico_2022/Arquivos_CNEFE/CSV/Municipio/29_BA/2929057_SAO_FELIX_DO_CORIBE.zip
✔ Step 1/3 (CNEFE ZIP ready) [1.7s]

ℹ Step 2/3: Building full H3 grid over municipality boundary...
Loading required namespace: sf
✔ Step 2/3 (H3 grid built) [9.7s]

ℹ Step 3/3: Counting address species per hexagon...
✔ Step 3/3 (Addresses counted) [1.5s]

> 
> # Count addresses per user-provided polygon (neighborhoods of Lauro de Freitas-BA)
> # Using geobr to download neighborhood boundaries
> library(geobr)
> nei_ldf <- subset(
+   read_neighborhood(year = 2022),
+   code_muni == 2919207
+ )
Using year/date 2022

Download status: 0 done; 1 in progress (0 b/s). Total size: 2.61 Kb (??%)...
Download status: 1 done; 0 in progress. Total size: 16.50 Mb (216%)... done!             
> hex_counts <- cnefe_counts(
+   code_muni = 2919207,
+   polygon_type = "user",
+   polygon = nei_ldf
+ )
ℹ Step 1/2: Ensuring data and preparing polygon...
Downloading ZIP (timeout = 300s): https://ftp.ibge.gov.br/Cadastro_Nacional_de_Enderecos_para_Fins_Estatisticos/Censo_Demografico_2022/Arquivos_CNEFE/CSV/Municipio/29_BA/2919207_LAURO_DE_FREITAS.zip
✔ Step 1/2 (Data and polygon ready) [2.3s]

ℹ Step 2/2: Counting addresses per polygon...
Error in `dbSendQuery()`:
! Binder Error: RTree indexes can only be created over GEOMETRY columns.
ℹ Context: rapi_prepare
ℹ Error type: BINDER
Backtrace:
     ▆
  1. ├─cnefetools::cnefe_counts(...)
  2. │ └─cnefetools:::.cnefe_counts_user_poly(...)
  3. │   └─cnefetools:::.cnefe_counts_user_poly_duckdb(...)
  4. │     ├─DBI::dbExecute(con, "CREATE INDEX IF NOT EXISTS poly_geom_idx ON user_polygons USING RTREE (geom);")
  5. │     └─DBI::dbExecute(con, "CREATE INDEX IF NOT EXISTS poly_geom_idx ON user_polygons USING RTREE (geom);")
  6. │       ├─DBI::dbSendStatement(conn, statement, ...)
  7. │       └─DBI::dbSendStatement(conn, statement, ...)
  8. │         ├─DBI::dbSendQuery(conn, statement, ...)
  9. │         └─duckdb::dbSendQuery(conn, statement, ...)
 10. │           └─duckdb (local) .local(conn, statement, ...)
 11. │             └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)
 12. │               ├─rlang::try_fetch(...)
 13. │               │ ├─base::tryCatch(...)
 14. │               │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 15. │               │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 16. │               │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 17. │               │ └─base::withCallingHandlers(...)
 18. │               └─duckdb:::rapi_prepare(conn, query, env)
 19. ├─duckdb (local) `<fn>`(...)
 20. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)
 21. │   └─rlang:::signal_abort(cnd, .file)
 22. │     └─base::signalCondition(cnd)
 23. └─rlang (local) `<fn>`(`<dckdb_rr>`)
 24.   └─handlers[[1L]](cnd)
 25.     └─duckdb:::rethrow_error_from_rapi(e, call)
 26.       └─rlang::abort(msg, call = call)
✖ Step 2/2: Counting addresses per polygon... [2.7s]

Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/4s] OK
  Running ‘testthat.R’ [4s/4s]
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE