* using log directory ‘/srv/hornik/tmp/CRAN_pretest/cmsafops.Rcheck’
* using R Under development (unstable) (2025-10-19 r88945)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘cmsafops/DESCRIPTION’ ... OK
* this is package ‘cmsafops’ version ‘1.4.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/5s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cmsafops’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/15s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking examples ... [25s/25s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [63s/63s] ERROR
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [63s/63s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(cmsafops)
  > 
  > test_check("cmsafops")
  Error in R_nc4_create: Permission denied (creation mode was 4096)
  149016292920292920149016149016149016149028149016[ FAIL 1 | WARN 0 | SKIP 0 | PASS 8932 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_extract.level.R:673:1'): (code run outside of `test_that()`) ───
  Error in `nc_create(outfile, c(vars, grid_vars), force_v4 = force_v4)`: Error in nc_create!
  Backtrace:
      ▆
   1. └─cmsafops::extract.level(...) at test_extract.level.R:673:1
   2.   └─cmsafops:::write_output_file(...)
   3.     └─ncdf4::nc_create(outfile, c(vars, grid_vars), force_v4 = force_v4)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 8932 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [8s/8s] OK
* checking HTML version of manual ... [4s/4s] NOTE
Found the following HTML validation problems:
calc_allDatesNc.html:50:1 (calc_allDatesNc.Rd:12): Warning: missing </ul> before </div>
calc_timestepNc.html:50:1 (calc_timestepNc.Rd:12): Warning: missing </ul> before </div>
check.coordinate.system.html:58:1 (check.coordinate.system.Rd:16): Warning: missing </ul> before </div>
get_dimensions.html:50:1 (get_dimensions.Rd:12): Warning: missing </ul> before </div>
get_nc_version.html:46:1 (get_nc_version.Rd:10): Warning: missing </ul> before </div>
get_time_info.html:54:1 (get_time_info.Rd:14): Warning: missing </ul> before </div>
mon.anomaly.climatology.html:88:1 (mon.anomaly.climatology.Rd:38): Warning: missing </ul> before </div>
read_file.html:56:1 (read_file.Rd:16): Warning: missing </ul> before </div>
timcumsum.html:89:1 (timcumsum.Rd:38): Warning: missing </ul> before </div>
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE