data_dir <- file.path("..", "testdata") tempfile_nc <- function() { tempfile_helper("yearmean_") } ########## simple case ########## file_out <- tempfile_nc() yearmean("SIS", file.path(data_dir, "ex_year.nc"), file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file, "SIS") expected_data <- c( seq(83.5, 95.5, by = 3), seq(84.5, 96.5, by = 3), seq(85.5, 97.5, by = 3), seq(263.5, 275.5, by = 3), seq(264.5, 276.5, by = 3), seq(265.5, 277.5, by = 3), 105.25, 108.25, 111.25, 83.5, 86.5, 106.25, 109.25, 112.25, 84.5, 87.5, 107.25, 110.25, 113.25, 85.5, 88.5 ) expected <- aperm(array(expected_data, c(3, 5, 3)), c(1, 2, 3)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "cmsaf_info")$value expect_equal(actual, "cmsafops::yearmean for variable SIS") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, by = 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 47, by = 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 157800, 166560))) }) nc_close(file) ########## var does not exist ######### test_that("warning is shown if var does not exist", { file_out <- tempfile_nc() expect_warning( yearmean("someVariable", file.path(data_dir, "ex_year.nc"), file_out), "Variable 'someVariable' not found. Variable 'SIS' will be used instead.") }) ########## var is empty ######### test_that("warning is shown if var is empty", { file_out <- tempfile_nc() expect_warning( yearmean("", file.path(data_dir, "ex_year.nc"), file_out), "Variable '' not found. Variable 'SIS' will be used instead.") }) ########## var is NULL ######### test_that("error is thrown if var is NULL", { file_out <- tempfile_nc() expect_error( yearmean(NULL, file.path(data_dir, "ex_year.nc"), file_out), "variable must not be NULL" ) }) ########## input file does not exist ######### test_that("error is thrown if input file does not exist", { file_out <- tempfile_nc() expect_error( yearmean("SIS", file.path(data_dir, "ex_doesNotExist.nc"), file_out), "Input file does not exist") }) ########## input filename is NULL ######### test_that("error is thrown if input file is NULL", { file_out <- tempfile_nc() expect_error( yearmean("SIS", NULL, file_out), "Input filepath must be of length one and not NULL" ) }) ########## output file already exists ######### test_that("error is thrown if output file already exists", { file_out <- tempfile_nc() cat("test\n", file = file_out) expect_error( yearmean("SIS", file.path(data_dir, "ex_year.nc"), file_out), paste0("File '", file_out, "' already exists. Specify 'overwrite = TRUE' if you want to overwrite it."), fixed = TRUE) }) ########## output file already exists (overwrite = TRUE) ######### test_that("no error is thrown if overwrite = TRUE", { file_out <- tempfile_nc() cat("test\n", file = file_out) expect_error( yearmean("SIS", file.path(data_dir, "ex_year.nc"), file_out, overwrite = TRUE), NA) }) ########## output file is NULL ######### test_that("error is thrown if output file is NULL", { expect_error( yearmean("SIS", file.path(data_dir, "ex_year.nc"), NULL), "Output filepath must be of length one and not NULL" ) }) #TODO add test case where input data is weird somehow