data_dir <- file.path("..", "testdata") tempfile_nc <- function() { tempfile_helper("timmax_") } ########## output ncdf version 3 ########## file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() timmax("SIS", file_in, file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(temp1, temp1, temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "cmsaf_info")$value expect_equal(actual, "cmsafops::timmax for variable SIS") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(149016)) }) nc_close(file) ########## output ncdf version 4 ########## file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() timmax("SIS", file_in, file_out, nc34 = 4) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(temp1, temp1, temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct in version 4", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct in version 4", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(149016)) }) nc_close(file) ########## output ncdf version 7 ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() test_that("error is thrown if ncdf version is wrong", { expect_error( timmax("SIS", file_in, file_out, nc34 = 7), "nc version must be in c(3, 4), but was 7", fixed = TRUE ) }) ########## output ncdf version is NULL ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() test_that("ncdf version NULL throws an error", { expect_error( timmax("SIS", file_in, file_out, nc34 = NULL), "nc_version must not be NULL" ) }) ########## variable does not exist ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() test_that("warning is shown if var does not exist", { expect_warning( timmax("lat", file_in, file_out), "Variable 'lat' not found. Variable 'SIS' will be used instead." ) }) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(temp1, temp1, temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct if non-existing variable is given", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct if non-existing variable is given", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(149016)) }) nc_close(file) ########## variable is null ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() test_that("error is thrown if variable is NULL", { expect_error( timmax(NULL, file_in, file_out), "variable must not be NULL" ) }) ########## variable is empty ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() test_that("warning is shown if var is empty", { expect_warning( timmax("", file_in, file_out), "Variable '' not found. Variable 'SIS' will be used instead." ) }) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(temp1, temp1, temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(149016)) }) nc_close(file) ########## input file does not exist ######### file_in <- file.path(data_dir, "xex_normal1.nc") file_out <- tempfile_nc() test_that("error is thrown if input file does not exist", { expect_error( timmax("SIS", file_in, file_out), "Input file does not exist") }) ########## input filename is NULL ######### file_out <- tempfile_nc() test_that("error is thrown if input filename is NULL", { expect_error( timmax("SIS", NULL, file_out), "Input filepath must be of length one and not NULL" ) }) ########## output file already exists ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() cat("test\n", file = file_out) test_that("error is thrown if output file already exists", { expect_error( timmax("SIS", file_in, file_out), paste0("File '", file_out, "' already exists. Specify 'overwrite = TRUE' if you want to overwrite it."), fixed = TRUE ) expect_equal(readLines(con = file_out), "test") }) ########## output file already exists (overwrite = TRUE) ######### file_in <- file.path(data_dir, "ex_normal1.nc") file_out <- tempfile_nc() cat("test\n", file = file_out) test_that("no error is thrown if overwrite = TRUE", { expect_error( timmax("SIS", file_in, file_out, overwrite = TRUE), NA ) }) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(temp1, temp1, temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(149016)) }) nc_close(file) ########## time length is 2 ########## file_in <- file.path(data_dir, "ex_time_dim1.nc") file_out <- tempfile_nc() timmax("SIS", file_in, file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(rep(c(253:272, 270:272), 2), temp1[4:6]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016))) actual <- ncvar_get(file, "time_bnds") expect_equal(actual, array(c(149016, 158544))) }) nc_close(file) ########## time length is 4 ########## file_in <- file.path(data_dir, "ex_time_dim3.nc") file_out <- tempfile_nc() timmax("SIS", file_in, file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(rep(c(259:272, rep(c(270:272), 3)), 2), temp1[10:12]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(192864))) actual <- ncvar_get(file, "time_bnds") expect_equal(actual, array(c(192864, 221328))) }) nc_close(file) ########## input ncdf version 4 ########## file_in <- file.path(data_dir, "ex_v4_1.nc") file_out <- tempfile_nc() timmax("SIS", file_in, file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(250, 272) expected_data <- c(temp1, temp1, temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(149016)) }) nc_close(file) ########## data contains NA ########## file_in <- file.path(data_dir, "ex_na.nc") file_out <- tempfile_nc() timmax("SIS", file_in, file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) temp1 <- seq(253, 271) expected_data <- c(rep(c(temp1, 269:271, 252), 2), temp1[1:3]) expected <- array(expected_data, dim = c(7, 7)) expect_equivalent(actual, expected) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 8, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 48, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(254208)) }) nc_close(file)