data_dir <- file.path("..", "testdata") tempfile_nc <- function() { tempfile_helper("extract.level_") } ########## default input ########## file_out <- tempfile_nc() extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 258), seq(254, 262)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "cmsaf_info")$value expect_equal(actual, "cmsafops::extract.level for variable SIS and level 1") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## output ncdf version 4 ########## file_out <- tempfile_nc() extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out, nc34 = 4) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 258), seq(254, 262)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## output ncdf version 7 ######### file_out <- tempfile_nc() test_that("error is thrown if ncdf version is wrong", { expect_error( extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out, nc34 = 7), "nc version must be in c(3, 4), but was 7", fixed = TRUE ) }) ########## output ncdf version is NULL ######### file_out <- tempfile_nc() test_that("ncdf version NULL throws an error", { expect_error( extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out, nc34 = NULL), "nc_version must not be NULL" ) }) ########## variable does not exist ######### file_out <- tempfile_nc() test_that("warning is shown if var does not exist", { expect_warning(extract.level("notExist", file.path(data_dir, "ex_extract.level.nc"), file_out), "Variable 'notExist' not found. Variable 'SIS' will be used instead.") }) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 258), seq(254, 262)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## variable is NULL ######### file_out <- tempfile_nc() test_that("error is thrown if variable is NULL", { expect_error( extract.level(NULL, file.path(data_dir, "ex_extract.level.nc"), file_out), "variable must not be NULL" ) }) ########## variable is empty ######### file_out <- tempfile_nc() test_that("warning is shown if var is empty", { expect_warning(extract.level("", file.path(data_dir, "ex_extract.level.nc"), file_out), "Variable '' not found. Variable 'SIS' will be used instead.") }) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 258), seq(254, 262)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## input file does not exist ######### file_out <- tempfile_nc() test_that("error is thrown if input file does not exist", { expect_error( extract.level("SIS", file.path(data_dir, "xemaple1.nc"), file_out), "Input file does not exist") }) ########## input filename is empty ######### file_out <- tempfile_nc() test_that("error is thrown if input filename is empty", { expect_error( extract.level("SIS", "", file_out), "Input file does not exist") }) ########## input filename is NULL ######### file_out <- tempfile_nc() test_that("error is thrown if input filename is NULL", { expect_error( extract.level("SIS", NULL, file_out), "Input filepath must be of length one and not NULL" ) }) ########## output file already exists ######### file_out <- tempfile_nc() cat("test\n", file = file_out) test_that("no error is thrown if output file already exists", { expect_error( extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out), paste0("File '", file_out, "' already exists. Specify 'overwrite = TRUE' if you want to overwrite it."), fixed = TRUE ) expect_equal(readLines(con = file_out), "test") }) ########## output file already exists (overwrite = TRUE) ######### file_out <- tempfile_nc() cat("test\n", file = file_out) test_that("no error is thrown if overwrite = TRUE", { expect_error( extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out, overwrite = TRUE), NA) }) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 258), seq(254, 262)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## different level ########## file_out <- tempfile_nc() extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out, level = 2) file <- nc_open(file_out) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(259, 267), seq(263, 271)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## all levels (dim = (3, 3, 3, 2)) ########## file_out <- tempfile_nc() extract.level("SIS", file.path(data_dir, "ex_extract.level.nc"), file_out, level = "all") test_that("three files have been created", { expect_true(file.exists(paste0(strsplit(file_out, split = ".nc"), "_level1.nc"))) expect_true(file.exists(paste0(strsplit(file_out, split = ".nc"), "_level2.nc"))) expect_true(file.exists(paste0(strsplit(file_out, split = ".nc"), "_level3.nc"))) }) file <- nc_open(paste0(strsplit(file_out, split = ".nc"), "_level1.nc")) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 258), seq(254, 262)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) file <- nc_open(paste0(strsplit(file_out, split = ".nc"), "_level2.nc")) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(259, 267), seq(263, 271)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) file <- nc_open(paste0(strsplit(file_out, split = ".nc"), "_level3.nc")) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(268, 272), seq(250, 253), seq(272, 272), seq(250, 257)) expected <- array(expected_data, dim = c(3, 3, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 6, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 46, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) ########## all levels (dim = (5, 5, 3, 2)) ########## file_out <- tempfile_nc() extract.level("SIS", file.path(data_dir, "ex_extract.level2.nc"), file_out, level = "all") test_that("three files have been created", { expect_true(file.exists(paste0(strsplit(file_out, split = ".nc"), "_level1.nc"))) expect_true(file.exists(paste0(strsplit(file_out, split = ".nc"), "_level2.nc"))) expect_true(file.exists(paste0(strsplit(file_out, split = ".nc"), "_level3.nc"))) }) file <- nc_open(paste0(strsplit(file_out, split = ".nc"), "_level1.nc")) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(250, 272), seq(250, 251), seq(256, 272), seq(250, 257)) expected <- array(expected_data, dim = c(5, 5, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 7, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 47, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) file <- nc_open(paste0(strsplit(file_out, split = ".nc"), "_level2.nc")) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(252, 272), seq(250, 253), seq(258, 272), seq(250, 259)) expected <- array(expected_data, dim = c(5, 5, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 7, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 47, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file) file <- nc_open(paste0(strsplit(file_out, split = ".nc"), "_level3.nc")) test_that("data is correct", { actual <- ncvar_get(file) expected_data <- c(seq(254, 272), seq(250, 255), seq(260, 272), seq(250, 261)) expected <- array(expected_data, dim = c(5, 5, 2)) expect_equivalent(actual, expected) }) test_that("variable attributes are correct", { actual <- ncatt_get(file, "SIS", "units")$value expect_equal(actual, "W m-2") actual <- ncatt_get(file, "SIS", "_FillValue")$value expect_equal(actual, -999) actual <- ncatt_get(file, "SIS", "standard_name")$value expect_equal(actual, "SIS_standard") actual <- ncatt_get(file, "SIS", "long_name")$value expect_equal(actual, "Surface Incoming Shortwave Radiation") actual <- ncatt_get(file, "SIS", "missing_value")$value expect_equal(actual, 0) }) test_that("attributes are correct", { actual <- ncatt_get(file, "lon", "units")$value expect_equal(actual, "degrees_east") actual <- ncatt_get(file, "lon", "long_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "standard_name")$value expect_equal(actual, "longitude") actual <- ncatt_get(file, "lon", "axis")$value expect_equal(actual, "X") actual <- ncatt_get(file, "lat", "units")$value expect_equal(actual, "degrees_north") actual <- ncatt_get(file, "lat", "long_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "standard_name")$value expect_equal(actual, "latitude") actual <- ncatt_get(file, "lat", "axis")$value expect_equal(actual, "Y") actual <- ncatt_get(file, "time", "units")$value expect_equal(actual, "hours since 1983-01-01 00:00:00") actual <- ncatt_get(file, "time", "long_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "standard_name")$value expect_equal(actual, "time") actual <- ncatt_get(file, "time", "calendar")$value expect_equal(actual, "standard") global_attr <- ncatt_get(file, 0) expect_equal(length(global_attr), 1) actual <- names(global_attr[1]) expect_equal(actual, "Info") actual <- global_attr[[1]] expect_equal(actual, "Created with the CM SAF R Toolbox.") }) test_that("coordinates are correct", { actual <- ncvar_get(file, "lon") expect_identical(actual, array(seq(5, 7, 0.5))) actual <- ncvar_get(file, "lat") expect_identical(actual, array(seq(45, 47, 0.5))) actual <- ncvar_get(file, "time") expect_equal(actual, array(c(149016, 149760))) }) nc_close(file)