* using log directory ‘/srv/hornik/tmp/CRAN/clustra.Rcheck’
* using R Under development (unstable) (2023-10-11 r85316)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘clustra/DESCRIPTION’ ... OK
* this is package ‘clustra’ version ‘0.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] Note_to_CRAN_maintainers
Maintainer: ‘George Ostrouchov <ostrouchovg@ornl.gov>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘clustra’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) gendata.Rd:10: Lost braces
    10 | \item{n_id}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                               ^
checkRd: (-1) gendata.Rd:12: Lost braces
    12 | \item{types}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                ^
checkRd: (-1) gendata.Rd:14: Lost braces
    14 | \item{intercepts}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                     ^
checkRd: (-1) gendata.Rd:16: Lost braces
    16 | \item{m_obs}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                ^
checkRd: (-1) gendata.Rd:18: Lost braces
    18 | \item{s_range}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                  ^
checkRd: (-1) gendata.Rd:20: Lost braces
    20 | \item{e_range}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                  ^
checkRd: (-1) gendata.Rd:22: Lost braces
    22 | \item{min_obs}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                  ^
checkRd: (-1) gendata.Rd:24: Lost braces
    24 | \item{noise}{See parameters of {\code{\link{gen_traj_data}}}.}
       |                                ^
checkRd: (-1) gendata.Rd:27: Lost braces
    27 | A list of length \code{sum(n_id)}, where each element is a matrix output by {\code{\link{oneid}}}.
       |                                                                             ^
checkRd: (-1) traj_rep.Rd:21: Lost braces
    21 | See return of {\code{\link{trajectories}}}.
       |               ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/2s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
clustra 6.317  0.224    1.05
Examples with CPU time > 2.5 times elapsed time
         user system elapsed ratio
clustra 6.317  0.224    1.05  6.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [2726s/413s] NOTE
Re-building vignettes had CPU time 6.6 times elapsed time
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs