context("foreach") foreach = foreach::foreach `%dopar%` = foreach::`%dopar%` `%do%` = foreach::`%do%` register_dopar_cmq(n_jobs=0) test_that("foreach::getDoParWorkers() returns n_jobs", { expect_equal(foreach::getDoParWorkers(), 0) }) test_that("simple foreach registration works", { res = foreach(i=1:3) %dopar% sqrt(i) cmp = foreach(i=1:3) %do% sqrt(i) expect_equal(res, cmp) }) test_that(".export objects are exported", { y = 5 res = foreach(x=1:3, .export="y") %dopar% { x + y } cmp = foreach(x=1:3, .export="y") %do% { x + y } expect_equal(res, cmp) # expect_error(foreach(x=1:3) %dopar% { x + y }) }) test_that(".packages are loaded", { expect_error(foreach(i="a string") %dopar% { md5sum(i) }) res = foreach(i="a string", .packages="tools") %dopar% { md5sum(i) } cmp = foreach(i="a string") %do% { md5sum(i) } expect_equal(res, cmp) }) test_that(".combine is respected", { res = foreach(i=1:3, .combine=c) %dopar% sqrt(i) cmp = foreach(i=1:3, .combine=c) %do% sqrt(i) expect_equal(res, cmp) res = foreach(i=1:3, .combine=append) %dopar% list(a=1, b=2) cmp = foreach(i=1:3, .combine=append) %do% list(a=1, b=2) expect_equal(res, cmp) res = foreach(i=1:3, .combine=cbind) %dopar% sqrt(i) cmp = foreach(i=1:3, .combine=cbind) %do% sqrt(i) expect_equal(res, cmp) res = foreach(i=1:3, .combine=rbind) %dopar% sqrt(i) cmp = foreach(i=1:3, .combine=rbind) %do% sqrt(i) expect_equal(res, cmp) }) test_that("no matrix unlisting (#143)", { fx = function(x) matrix(c(1,2)+x, ncol=1) res = foreach(i=1:3) %dopar% fx(i) cmp = foreach(i=1:3) %do% fx(i) expect_equal(res, cmp) }) test_that("automatic export in foreach", { fx = function(x) x + y y = 5 res = foreach(x=1:3) %dopar% { x + y } cmp = foreach(x=1:3) %do% { x + y } expect_equal(res, cmp) }) test_that("NULL objects are exported", { fx = function(x) is.null(x) y = NULL res = foreach(i=1) %dopar% fx(y) cmp = foreach(i=1) %do% fx(y) expect_equal(res, cmp) }) test_that("external worker", { register_dopar_cmq(n_jobs=1) res = foreach(i=1:3) %dopar% sqrt(i) cmp = foreach(i=1:3) %do% sqrt(i) expect_equal(res, cmp) }) #test_that("foreach works via BiocParallel", { # skip_if_not_installed("BiocParallel") # # BiocParallel::register(BiocParallel::DoparParam()) # res = BiocParallel::bplapply(1:3, sqrt) # cmp = foreach(i=1:3) %do% sqrt(i) # # expect_equal(res, cmp) #})