# markers table markers_hs_tbl <- clustermole_markers(species = "hs") markers_mm_tbl <- clustermole_markers(species = "mm") # gene list gene_names <- unique(markers_hs_tbl$gene) gene_names <- sample(gene_names) test_that("clustermole_overlaps() wrong input", { expect_error(clustermole_overlaps(gene_names[1:3], species = "hs")) expect_error(clustermole_overlaps(gene_names[1:10000], species = "hs")) expect_error(clustermole_overlaps(c(gene_names[1:3], "X", "Y", "Z"), species = "hs")) expect_error(clustermole_overlaps(as.list(gene_names[1:10]), species = "hs")) }) test_that("clustermole_overlaps() human input", { overlap_tbl <- clustermole_overlaps(genes = gene_names[1:50], species = "hs") expect_s3_class(overlap_tbl, "tbl_df") expect_gt(nrow(overlap_tbl), 1) }) # gene list for mouse overrepresentation tests gene_names <- unique(markers_mm_tbl$gene) gene_names <- sample(gene_names) test_that("clustermole_overlaps() mouse input", { overlap_tbl <- clustermole_overlaps(genes = gene_names[1:50], species = "mm") expect_s3_class(overlap_tbl, "tbl_df") expect_gt(nrow(overlap_tbl), 1) })