require(TMB) compile(testthat::test_path("ref", "simple.cpp")) dyn.load(dynlib(testthat::test_path("ref", "simple"))) ## Test data set.seed(123) y <- rep(1900:2010, each = 2) year <- factor(y) quarter <- factor(rep(1:4, length.out = length(year))) period <- factor((y > mean(y)) + 1) ## Random year+quarter effect, fixed period effect: B <- model.matrix(~ year + quarter - 1) A <- model.matrix(~ period - 1) B <- as(as(as(B, "dMatrix"), "generalMatrix"), "TsparseMatrix") A <- as(as(as(A, "dMatrix"), "generalMatrix"), "TsparseMatrix") u <- rnorm(ncol(B)) ## logsdu=0 beta <- rnorm(ncol(A)) * 100 eps <- rnorm(nrow(B), sd = 1) ## logsd0=0 x <- as.numeric(A %*% beta + B %*% u + eps) ## Fit model obj <- MakeADFun( data = list(x = x, B = B, A = A), parameters = list(u = u * 0, beta = beta * 0, logsdu = 1, logsd0 = 1), random = "u", DLL = "simple", silent = TRUE ) opt <- nlminb(obj$par, obj$fn, obj$gr) sdr <- sdreport(obj) report <- obj$report(obj$env$last.par.best) args <- list( data = list(x = x, B = B, A = A), parameters = list(u = u * 0, beta = beta * 0, logsdu = 1, logsd0 = 1), random = "u", DLL = "simple", silent = TRUE )