* using log directory 'd:/RCompile/CRANincoming/R-devel/clustTMB.Rcheck'
* using R Under development (unstable) (2024-09-06 r87103 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'clustTMB/DESCRIPTION' ... OK
* this is package 'clustTMB' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Andrea M. Havron <andrea.havron@noaa.gov>'

New submission

Possibly misspelled words in DESCRIPTION:
  Covariate (8:5)
  Spatio (2:8)
  multinomial (9:35)
  spatio (7:21)

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid URLs:
  URL: https://inlabru-org.github.io/fmesher (moved to https://inlabru-org.github.io/fmesher/)
    From: inst/doc/SpatialExMeuseData.html
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'clustTMB' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  summary.clustTMB.Rd: sdreport
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [435s] ERROR
  Running 'testthat.R' [435s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(clustTMB)
  > 
  > test_check("clustTMB")
  Loading required package: mclust
  Package 'mclust' version 6.1.1
  Type 'citation("mclust")' for citing this R package in publications.
  Loading required package: MoEClust
  
  Package 'MoEClust' version 1.5.2.
  
  Type '?MoEClust' to see a brief guide to how to use this R package.
  Type 'citation("MoEClust")' for citing the package in publications.
  Type 'MoE_news()' to see new features recent changes and bug fixes.
  
  Loading required package: mvnfast
  Loading required package: FMsmsnReg
  Loading required package: TMB
  using C++ compiler: 'g++.exe (GCC) 13.2.0'
  make[1]: Entering directory '/d/RCompile/CRANincoming/R-devel/clustTMB.Rcheck/tests/testthat'
  make[1]: Nothing to be done for 'all'.
  make[1]: Leaving directory '/d/RCompile/CRANincoming/R-devel/clustTMB.Rcheck/tests/testthat'
  make[1]: Entering directory '/d/RCompile/CRANincoming/R-devel/clustTMB.Rcheck/tests/testthat'
  make[1]: Leaving directory '/d/RCompile/CRANincoming/R-devel/clustTMB.Rcheck/tests/testthat'
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 467 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-unit-utils-fittmb.R:89:1'): (code run outside of `test_that()`) ──
  Error in `dyn.unload(dynlib(testthat::test_path("ref", "simple")))`: shared object 'd:/RCompile/CRANincoming/R-devel/clustTMB.Rcheck/tests/testthat/ref/simple.dll' was not loaded
  Backtrace:
      ▆
   1. └─base::dyn.unload(dynlib(testthat::test_path("ref", "simple"))) at test-unit-utils-fittmb.R:89:1
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 467 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [57s] OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 2 NOTEs