* installing *source* package ‘clrng’ ... ** using staged installation OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 Linux OS ./configure: 1: ldconfig: not found found OpenCL library Checking OpenCL C++ API OPENCL_INC not set, using default include directory /usr/include cl2.hpp header exists *********** Generated Makevars file *********** PKG_CPPFLAGS=-I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 PKG_CXXFLAGS= PKG_LIBS=-framework OpenCL BUILD_LIB= $(SHLIB): $(BUILD_LIB) ../inst/include/loader/libOpenCL.a: cd ../inst/include/loader/ && mkdir -p .$(R_ARCH) && $(MAKE) libOpenCL.a \ CC="$(CC)" CFLAGS="$(ALL_CFLAGS)" AR="$(AR)" RM="$(RM)" \ ICD_OS=icd_linux PKG_CPPFLAGS=-I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP PKG_CXXFLAGS= PKG_LIBS=-lOpenCL BUILD_LIB= $(SHLIB): $(BUILD_LIB) ../inst/include/loader/libOpenCL.a: cd ../inst/include/loader/ && mkdir -p .$(R_ARCH) && $(MAKE) libOpenCL.a \ CC="$(CC)" CFLAGS="$(ALL_CFLAGS)" AR="$(AR)" RM="$(RM)" \ ICD_OS=icd_linux PKG_CPPFLAGS=-I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/opt/rocm/opencl/include/' -I. -pthread PKG_CXXFLAGS= PKG_LIBS=-L/opt/rocm/opencl/lib/ -lOpenCL -Wl,-rpath,/opt/rocm/opencl/lib/ BUILD_LIB= $(SHLIB): $(BUILD_LIB) ../inst/include/loader/libOpenCL.a: cd ../inst/include/loader/ && mkdir -p .$(R_ARCH) && $(MAKE) libOpenCL.a \ CC="$(CC)" CFLAGS="$(ALL_CFLAGS)" AR="$(AR)" RM="$(RM)" \ ICD_OS=icd_linux PKG_CPPFLAGS=-I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP PKG_CXXFLAGS= PKG_LIBS=-lOpenCL BUILD_LIB= $(SHLIB): $(BUILD_LIB) ../inst/include/loader/libOpenCL.a: cd ../inst/include/loader/ && mkdir -p .$(R_ARCH) && $(MAKE) libOpenCL.a \ CC="$(CC)" CFLAGS="$(ALL_CFLAGS)" AR="$(AR)" RM="$(RM)" \ ICD_OS=icd_linux *********************************************** ** libs Makevars:20: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:9: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' Makevars:31: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:20: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' Makevars:42: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:31: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' using C++ compiler: ‘Debian clang version 18.1.8 (1+b1)’ Makevars:20: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:9: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' Makevars:31: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:20: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' Makevars:42: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:31: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c fisher_test_sim.cpp -o fisher_test_sim.o In file included from fisher_test_sim.cpp:15: In file included from ./gpuRandom.hpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ In file included from fisher_test_sim.cpp:15: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:17: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/matrix.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/detail/matrix_def.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/scalar.hpp:29: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/meta/result_of.hpp:42: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fisher_test_sim.cpp:15: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fisher_test_sim.cpp:15: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fisher_test_sim.cpp:15: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c gpuRnMatrix.cpp -o gpuRnMatrix.o In file included from gpuRnMatrix.cpp:1: In file included from ./gpuRandom.hpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ In file included from gpuRnMatrix.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:17: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/matrix.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/detail/matrix_def.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/scalar.hpp:29: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/meta/result_of.hpp:42: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gpuRnMatrix.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gpuRnMatrix.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gpuRnMatrix.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c lfactSum.cpp -o lfactSum.o In file included from lfactSum.cpp:1: In file included from ./gpuRandom.hpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ In file included from lfactSum.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:17: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/matrix.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/detail/matrix_def.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/scalar.hpp:29: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/meta/result_of.hpp:42: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from lfactSum.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from lfactSum.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from lfactSum.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c mrg31k3pkernelString.cpp -o mrg31k3pkernelString.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c qqnorm.cpp -o qqnorm.o In file included from qqnorm.cpp:1: In file included from ./gpuRandom.hpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ In file included from qqnorm.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:17: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/matrix.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/detail/matrix_def.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/scalar.hpp:29: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/meta/result_of.hpp:42: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from qqnorm.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from qqnorm.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from qqnorm.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c streams.cpp -o streams.o In file included from streams.cpp:1: In file included from ./gpuRandom.hpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ In file included from streams.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:17: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/matrix.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/detail/matrix_def.hpp:26: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/scalar.hpp:29: In file included from /srv/hornik/tmp/CRAN/Library/RViennaCL/include/viennacl/meta/result_of.hpp:42: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from streams.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from streams.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from streams.cpp:1: In file included from ./gpuRandom.hpp:12: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/getVCLptr.hpp:5: In file included from /srv/hornik/tmp/CRAN/Library/gpuR/include/gpuR/dynVCLMat.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c systemInfo.cpp -o systemInfo.o In file included from systemInfo.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :8:9: note: previous definition is here 8 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/usr/include/' -DHAVE_CL_CL2_HPP -I'/srv/hornik/tmp/CRAN/Library/RViennaCL/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/gpuR/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c typeDef.cpp -o typeDef.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o clrng.so RcppExports.o fisher_test_sim.o gpuRnMatrix.o lfactSum.o mrg31k3pkernelString.o qqnorm.o streams.o systemInfo.o typeDef.o -lOpenCL -L/home/hornik/tmp/R/lib -lR Makevars:20: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:9: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' Makevars:31: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:20: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' Makevars:42: warning: overriding recipe for target '../inst/include/loader/libOpenCL.a' Makevars:31: warning: ignoring old recipe for target '../inst/include/loader/libOpenCL.a' installing to /srv/hornik/tmp/CRAN/clrng.Rcheck/00LOCK-clrng/00new/clrng/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clrng)